Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5380 145 6e-30 seq5614 118 8e-22 seq4595 109 4e-19 >seq5380 Length=870010 Score = 145 bits (160), Expect = 6e-30 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || |||||||| || | ||||| || || |||||||||||||| | | ||||||| | Sbjct 656796 CGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGAGAGGGTGCGACCA 656737 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | |||| | |||||||| || ||||| || |||||| Sbjct 656736 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 656677 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | ||||||| |||| | ||| || || |||| || ||||| || || Sbjct 656676 TCCTG-AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGGGTGAT 656618 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || | ||| ||||| || |||||||| || Sbjct 656617 GGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 656579 >seq5614 Length=3457230 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| |||||||| | || || || ||||| ||||| || |||| Sbjct 1200699 CCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGAC 1200640 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || ||||||||| | ||||||| ||||| || || ||| Sbjct 1200639 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1200580 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || ||||| | || | || || || |||| || Sbjct 1200579 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGTTCGACC 1200520 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || || || ||||| ||||| || || ||||| |||||||| || Sbjct 1200519 TCCAAGGTGATGGTCTTGCCGGTTAAAGTCTTGACAAAGATCTGCATATT 1200470 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| |||||||| | || || || ||||| ||||| || |||| Sbjct 1200927 CCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGAC 1200868 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || ||||||||| | ||||||| ||||| || || ||| Sbjct 1200867 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1200808 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || |||||| | || | || || || | || || Sbjct 1200807 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACC 1200748 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || ||||| || || || || ||||| |||||||| Sbjct 1200747 TCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200701 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||| |||||||| | || || || ||||| ||||| || || | | ||||| Sbjct 1201144 ACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGTCC 1201085 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || ||||||||| | ||||||| ||||| || || ||||||||||| || Sbjct 1201084 GTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTT 1201025 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || |||||| | || | || || || | || || || | || || Sbjct 1201024 GTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGAT 1200965 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || || ||||| |||||||| Sbjct 1200964 GGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200929 >seq4595 Length=987418 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | || ||| ||||||||||| | || || || || || || || ||||| | Sbjct 267812 TCCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAATCAGA 267871 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||| ||| || || || ||||| || | |||| | |||||||| || || Sbjct 267872 CAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGG 267931 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| ||||| ||||| || | ||| || ||| | || | |||||| || | || || Sbjct 267932 AATTCCCTCCTTGTCCTGGATTTTGGCCTTTACATTCTCGATAGTGTCCGATGGCTCCAC 267991 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || ||||| | ||| || || || |||||||| Sbjct 267992 CTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 268039 Score = 105 bits (116), Expect = 5e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||| || || || || || || || ||||| || || | | || ||| Sbjct 268508 ACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACC 268567 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || ||||| || | |||| | |||||||| || ||||| ||||| || Sbjct 268568 GTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTT 268627 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || |||||| | ||| ||| | || | || || || | || || || || || | Sbjct 268628 GTCCTG-AATTTTGGCTTTCACATTCTCGATCGTATCGGAGGGCTCAACCTCCAGGGTAA 268686 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 268687 TGGTTTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 268726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385192185781314