Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq5454 145 6e-29 seq5580 120 2e-21 seq1974 111 1e-18 seq5646 105 5e-17 seq2054 100 2e-15 >seq5454 Length=2883911 Score = 145 bits (160), Expect = 6e-29 Identities = 927/1471 (63%), Gaps = 29/1471 (2%) Strand=Plus/Plus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 ||| || ||||| || || ||||||||||||| ||| || ||||| || || | || || Sbjct 1047147 GGCGGTAACATTCAGGATTCCATTGGCATCCAGATCGAAGGTGACATCGATCTTGGGTAC 1047206 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 || || |||| || || || || || ||| || || |||| ||| || || || Sbjct 1047207 TCCCCTAGGAGCTGGCGGAATGCCGGTCAGATTGAAGGTGCCCAACACATTGTTGTCCTT 1047266 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || | || || || ||||||| |||||| || ||| | | || || || | || Sbjct 1047267 GGTCAGAGCACGCTCTCCTTCGAAAACTTGGATGGTCACTGCTGGCTGGTTGTCCGCGTA 1047326 Query 281605 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || || || | |||| || || ||||| |||| | || || | ||||| Sbjct 1047327 GGTGGTGAAGGTCTTCGATTGCTTGCAGGGAATGCGACTGTTGCGCTCGATCAGCTTGGT 1047386 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | |||||||| ||||| | || || || ||||||| ||||| || || | | Sbjct 1047387 CATCACTCCACCAGCGGTTTCAATTCCCAGTGATAGAGGAGCCACATCCACCAGCAGCAC 1047446 Query 281725 AT-TTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 281783 || |||| | | || | || | |||||||||||| || || ||||| || | Sbjct 1047447 ATCCTTGATCTGGCTGCTCTCGTCTCCCGA-AAGAATAGCTGCCTGGATGGCAGCTCCGT 1047505 Query 281784 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAA-AAAATTT 281842 | || || || || || ||||| | | ||| || | || || || || | | Sbjct 1047506 AAGCCACCGCCTCGTCCGGATTGATGGAGAGATTAAGGGTCTTGCCGCCAAAGAAGCTCT 1047565 Query 281843 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902 | | | ||| | ||||| ||||| |||| || || ||||| | ||||| || || Sbjct 1047566 GCAGCAGGTTCT-GCACCTTGGGAATGCGAGTCGAGCCACCAACCAGGACAATATCGTGG 1047624 Query 281903 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCT 281962 | ||| || |||| || | || | | || || ||||| | || | | | Sbjct 1047625 ATCTGGCCCTTGTCCATCTTGGCGTCGGCGAGTGCCTTCTCCACGGGCTGGAG-CGTGTT 1047683 Query 281963 -CTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-T 282020 | || | ||| |||||||| |||||| | || | | | || | || || | Sbjct 1047684 GCGGAAGAGGTCGCCGCAAAGTTCCTCGAATCTGGCGCGGCTCACCTTG-GAGTAGAAGT 1047742 Query 282021 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 282080 | ||| || |||| || ||| | || | || || | || || ||||| | | Sbjct 1047743 CGTGTCCCTCAAACAGAGCATCGATCTCCAGCGAAGCCTCCGTGCTGGAGGATAGAGTGC 1047802 Query 282081 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAA 282138 | || ||||| || || || | || | || | ||| | | ||||| ||| Sbjct 1047803 GCTTTGCACGCTCGGCAGCCGTGCGAAGGCGACGAAGTGCTCTGG--GATTGGAGCGCAA 1047860 Query 282139 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT-ACAAGACGATTATCAA 282197 ||| | || || || |||||||| || || | || ||| || ||||| || |||| Sbjct 1047861 ATCCTTCTTGTACTTCCTCTTGAACTCCTCGGC-CAGGTGGTTCACCAGACGGTTGTCAA 1047919 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG---TCCAT 282254 | || || || |||| | ||| | ||| | || | | || | ||| || ||| | Sbjct 1047920 AGTCCTCGCCACCCAGATGAGTGTCTCCGGCGGTGGAGCGCACCTCGAAGAGCGATCCCT 1047979 Query 282255 CTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 282314 | || | | || || | |||||| |||||| || |||| |||||| || || |||| Sbjct 1047980 CGTCGATGGTCAGAATGGAGACATCAAAGGTTCCGCCGCCCAGATCAAAGATGAGCACAT 1048039 Query 282315 TCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 282374 | |||| | | || || || || || || || | ||||||||| || || || | Sbjct 1048040 TGCGTTCTCCCTTAAGATTCTTGTCCAGGCCGTAGGCCAGAGCAGCAGCGGTGGGCTCGT 1048099 Query 282375 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 282434 | ||||| | | ||||| | || || || || |||||||| ||||| |||| | Sbjct 1048100 TGATAATGCGGAGCACATTCAATCCGGCGATGGCGCCGGCATCTTTGGTGGCCTGTCGCT 1048159 Query 282435 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATAT 282494 | |||||||| || || || || || || || ||||||||| | ||| | || | | Sbjct 1048160 GAGAATCGTTGAAGTAGGCGGGCACTGTGATGACGGCATCTTTAACTGTAGTGCCCAAAA 1048219 Query 282495 AAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAAT 282554 | || || || | ||||| || | | | ||| || || | ||| |||| Sbjct 1048220 AGGCCTCGGCCGTCTCCTTCATCTTGGTAAGCACCATCGAGCTGATCTCTTCCGGAGCGA 1048279 Query 282555 ATTGCTTGGATTCATTTTGATATGATACTTCA-----AAATATGGTTTATTACCAACATT 282609 | |||| || | ||| ||| || | | ||||| | | || Sbjct 1048280 AGCGCTTCTCCTCGCCCT----TGA-ACTCCACGCTCATCTTGGGTTTGCCATTGTCGTT 1048334 Query 282610 AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG-TCATTAAAATCTC 282668 || || |||||||| | ||||| ||| || | ||| || || | ||| | Sbjct 1048335 GATCACGCGGAATGGCCAGTGCTTCATGTCTTCCTGGA-TCTTGGGATCGTCGAAACGGC 1048393 Query 282669 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATT 282728 |||||| ||||| || ||||| || | | || |||| || | || | || | | Sbjct 1048394 GACCAATCAATCGCTTGGCATCGAAGACCGAGTTCTTTGGGTTCATGGCCACCTGGTTCT 1048453 Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788 |||| || |||||||| || | |||| || || |||| ||| || ||||| ||||||| Sbjct 1048454 TGGCAGCGTCTCCAATTAGGCGCTCTGAATCGGTGAATGCAACGTAGGATGGGGTTGTGC 1048513 Query 282789 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAAC 282848 | || || || |||||||| ||||| || || || || | || | ||||| || || Sbjct 1048514 GGTTGCCCTGGTCATTCGCGATAATCTCCACCTTTCCGTGCTGGAAGACACCAACGCACG 1048573 Query 282849 TAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 | || || || || || || |||||||| Sbjct 1048574 AGTACGTGGTGCCCAAGTCGATTCCAATAGC 1048604 >seq5580 Length=1179668 Score = 120 bits (132), Expect = 2e-21 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 637126 GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACT 637185 ||||||| ||| || || |||||||| || |||||||| |||| || || |||| || Sbjct 1005547 GTCGATTTTTCATCGCCCAATATTGCCAAGCAAATGCATGTTGGTCACTTGCGATCCACA 1005488 Query 637186 ATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATT 637245 |||||||| ||||| |||||| || |||| || | || ||||| || |||||| Sbjct 1005487 ATTATTGGCGAATCGATTTGTCGGCTATTGGAGTTTCTTGAGCACGACGTGGTCCGTATT 1005428 Query 637246 AATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 |||||| | || ||||||||||| || || || ||||| ||||| Sbjct 1005427 AATCATCTTGGCGATTGGGGAACACAGTTTGGCATGTTGATTGC 1005384 >seq1974 Length=2389 Score = 111 bits (122), Expect = 1e-18 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| ||||||||| || ||||| || || || | || || | |||||||||| Sbjct 537 CCATAAGCAAGAGCAGCAGCCGTCGGTTCGTTGATGATACGCAGGACTTCAAGACCAGCA 478 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | ||||||||||| || || || | || | ||||||||| || || ||||| || Sbjct 477 ATACGGCCTGCATCTTTGGTAGCCTGACGCTGGGCATCGTTAAAGTAAGCCGGAACCGTG 418 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 || ||||| | || |||| || |||| || || || |||| ||||||||| Sbjct 417 ATCACGGCCTGCGTCACTTTTTCACCAAGGTACGCCTCGGCGGTTTCTTTCATTTT 362 >seq5646 Length=1495928 Score = 105 bits (116), Expect = 5e-17 Identities = 355/550 (65%), Gaps = 2/550 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || ||||| || |||| |||||| || || || || || || || | || ||| Sbjct 290089 TTCTTGTCCAGACCGTAAGCAATAGCAGCGGCCGTGGGCTCGTTGATGATACGCAGCACA 290148 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||| || || |||| ||||| || ||||| || | || || ||||| || || Sbjct 290149 TTCAGACCGGCGATGGTTCCAGCATCCTTGGTGGCCTGACGCTGCGAGTCGTTGAAGTAG 290208 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || ||||| || || || | || || || || | || || || || | Sbjct 290209 GCCGGCACAGTGATGACAGCGTTGGTCACAGTCTTGCCCAGGTAGGCCTCAGCGGTCTCC 290268 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG-CTTGGATTCATT 282570 ||||| || | | | ||| || || || | || || ||| | | ||| |||| Sbjct 290269 TTCATCTTGGTCAGCACCATCGAGGAGATCTCCTCGGG-GAAGAAGGTCTTCTTCTCATC 290327 Query 282571 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATA 282630 | || | || || | | || || | || | | || | || ||||| | Sbjct 290328 CTTGTAGGTCACCTCGATCTTGGGCTTGCCGTCCACGCTGACCACCTCGAAGGGCCAGTG 290387 Query 282631 TTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 282690 ||||| || || || || ||| | || | | ||||| || || || ||||| Sbjct 290388 CTTCATGTCCGACTGCACGGCGGAGTCGTCGAACTTGCGGCCAATCAAACGCTTGGCATC 290447 Query 282691 AAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 282750 || || || | ||| || || | || | || | ||||| ||||| || |||||| | Sbjct 290448 GAAGATCGTCTGGGTCGGGTTCATCGCCACCTGGTTCTTGGCGGCATCGCCGATCAGACG 290507 Query 282751 TTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 282810 || || || || || | |||||| |||||||| || |||||||| || || || || || Sbjct 290508 CTCCGTATCGGTGAAGGCAACATAGGATGGAGTGGTACGATTACCCTGGTCGTTGGCGAT 290567 Query 282811 AATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAAT 282870 || || || || |||| || | || || || || | || || || |||||||| Sbjct 290568 GATCTCGACCTTGCCATGCTGGAACACGCCCACGCACGAGTAGGTGGTGCCCAAATCAAT 290627 Query 282871 ACCAATAGCA 282880 ||||| |||| Sbjct 290628 ACCAACAGCA 290637 >seq2054 Length=14114 Score = 100 bits (110), Expect = 2e-15 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || || || || || | ||| ||||| || ||| | || || || | || ||| Sbjct 4911 TTCTTTTCCAGCCCGTAAGCCAGAGCCGCAGCGGTGGGTACGTTGATGATACGCAGAACT 4852 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 | ||||||||| || | || ||||| || || || || | || | ||||||||| || Sbjct 4851 TCAAGACCAGCGATACGACCGGCATCCTTGGTTGCCTGACGCTGGGCATCGTTAAAGTAA 4792 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 |||||||| ||||||||||| | || |||| || |||| ||||| || |||| Sbjct 4791 GCAGGAACGGTAATAACGGCCTGCGTCACTTTTTCACCAAGGTAAGCCTCGGCGGTTTCC 4732 Query 282512 TTCATTTT 282519 |||||||| Sbjct 4731 TTCATTTT 4724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740347902916404