Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5380 158 2e-33 seq5614 152 1e-31 seq4595 149 1e-30 seq4758 95.1 2e-14 >seq5380 Length=870010 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||||| ||| || || ||||| || ||||||||||| || | | ||| Sbjct 656796 CGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGAGAGGGTGCGACCA 656737 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||| ||||| || | || ||||||||||| |||||||| || Sbjct 656736 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 656677 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| ||||| |||||||| || ||||| ||||| || || | || || Sbjct 656676 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGGGTGATG 656617 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 656616 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 656582 >seq5614 Length=3457230 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||||| || || |||| |||||| || || || || || || || | Sbjct 1200929 TACCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCG 1200870 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||||| || || || || ||||||||||| | || || || ||||| | Sbjct 1200869 ACAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGG 1200810 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || ||||| ||||| ||||| || || | Sbjct 1200809 GAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGA 1200750 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 1200749 CCTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200701 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||||| || || |||| |||||| || || || || || || || | Sbjct 1200701 TACCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCG 1200642 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||||| || || || || ||||||||||| | || || || ||||| | Sbjct 1200641 ACAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGG 1200582 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || ||||| ||||| ||||| | Sbjct 1200581 GAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGTTCGA 1200522 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| || || ||||| ||||| |||||||| Sbjct 1200521 CCTCCAAGGTGATGGTCTTGCCGGTTAAAGTCTTGACAAAGATCTGCAT 1200473 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || || |||| |||||| || || || || || || || || ||| | | || Sbjct 1201144 ACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGTCC 1201085 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || ||||||||||| | || || || ||||| || || || ||||| Sbjct 1201084 GTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTT 1201025 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || ||||| ||||| ||||| || || || ||||| || || Sbjct 1201024 GTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGAT 1200965 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| ||||| |||||||| Sbjct 1200964 GGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200929 >seq4595 Length=987418 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | || ||| || || || |||| |||||| || ||||| ||||| |||||||| Sbjct 267813 CCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAATCAGAC 267872 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || || ||||| || | || ||||||||||| Sbjct 267873 AGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 267932 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || || || || || |||||||| || || || || || || || Sbjct 267933 ATTCCCTCCTTGTCCTGGATTTTGGCCTTTACATTCTCGATAGTGTCCGATGGCTCCACC 267992 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || ||||| || |||| ||||| || || |||||||| Sbjct 267993 TCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 268039 Score = 141 bits (156), Expect = 2e-28 Identities = 178/243 (73%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || ||||| || || || || ||||| || || || || | Sbjct 268495 TACCACCACGGAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGG 268554 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | |||||| || || || || || || ||||| || | || |||||||||| Sbjct 268555 ACAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAG 268614 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| || ||||| || ||||| ||||| || |||||||| || || | Sbjct 268615 GAATTCCCTCCTTGTCCTGAATTTTGGCTTTCACATTCTCGATCGTATCGGAGGGCTCAA 268674 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTT 82821 | |||| || || || || || ||||| ||||| ||||| ||||||||| || ||| | Sbjct 268675 CCTCCAGGGTAATGGTTTTTCCAGTCAAGGTCTTCACAAAGATCTGCATT-TTGGATTAT 268733 Query 82822 TCT 82824 ||| Sbjct 268734 TCT 268736 Score = 140 bits (154), Expect = 6e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| || || || || ||||| || || ||||| || | | | | || Sbjct 267596 ACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCC 267655 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || || || ||||| || | || ||||||||||| ||||| ||||| Sbjct 267656 ATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTT 267715 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||||||| || || ||||| || || || || || || || |||| ||| || Sbjct 267716 ATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTGAT 267775 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || |||| ||||| || || ||||||||| Sbjct 267776 GGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCATT 267812 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| || || ||||| ||||| || || || || || | | | | ||| Sbjct 268280 ACGCAAGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACC 268339 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || || || || || | || ||||||||||| ||||| ||||| Sbjct 268340 GTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTT 268399 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||||||| || || ||||| || || || || || || || |||| ||| || Sbjct 268400 ATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTGAT 268459 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| || || |||||||| Sbjct 268460 GGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 268495 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || ||||||| |||||| || ||||| || || ||||| || Sbjct 267357 CCTCCGCGGAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAATCGGAC 267416 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | |||||| || ||||| || || || || || | | || ||||||||||| Sbjct 267417 AAAGTGCGACCGTCCTCCAGTTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGG 267476 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || || || || || || || || ||||| || || || ||||| Sbjct 267477 ATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATAGTGTCCGACGGCTCTACC 267536 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || || || || || | ||||| || || |||||||| Sbjct 267537 TCCAGAGTGATGGTTTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 267583 Score = 123 bits (136), Expect = 5e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| || || ||||| ||||| || || || || || | | | | || Sbjct 268052 ACGCAAGACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGTCC 268111 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || || |||||||| || | || ||||||||||| ||||| ||||| Sbjct 268112 ATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTT 268171 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || || || || || ||||| || || || || || || || |||| ||| || Sbjct 268172 GTCCTGGATTTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTGAT 268231 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||| ||||| || || |||||||| Sbjct 268232 GGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 268267 >seq4758 Length=893088 Score = 95.1 bits (104), Expect = 2e-14 Identities = 193/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 198339 CTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGA 198398 || ||||| | |||| | ||| || || | || ||||||||||| | || | | Sbjct 498788 CTGTGGAACTCCGCGCAGTTGCAGTTGGTACGCGAGGGAAAAATGCACGGCTTCCTCCGT 498729 Query 198399 ATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTAT 198458 ||||||||||| |||||||| ||||||||||| || |||||| | || || || Sbjct 498728 ATGTACTGGGCCAAAAAGATCCTTGAATGGACTGCCACTCCGGAACAAGCGCTGGAGTAC 498669 Query 198459 AGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 198518 ||| || ||| | |||||| || ||||| || || ||||| || || || Sbjct 498668 GCGATCCTGCTTAACGACAAGTACAGTCTCGACGGTCGAGACCCCAACGGTTATGTGGGA 498609 Query 198519 TGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTTGGG 198578 ||||||||||| || | || | ||||| | ||||| || | |||| || || Sbjct 498608 TGTATGTGGTCGATCGGAGGCATTCATGACATGGGCTGGAAGGAGCGGGCTATCTTCGGT 498549 Query 198579 AAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGT 198625 ||| | | | |||||| ||| |||| | ||| ||| || ||||| Sbjct 498548 AAGGTTCGGTTTATGAACTATCAGGGCTGCAAGCGAAAGTTCGATGT 498502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981754816630606