Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq4758 89.7 9e-13 >seq4758 Length=893088 Score = 89.7 bits (98), Expect = 9e-13 Identities = 172/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 183055 GAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 183114 || ||||||||||| | || | || ||||||||||| |||||||| ||||||||||| Sbjct 498755 GAGGGAAAAATGCACGGCTTCCTCCGTATGTACTGGGCCAAAAAGATCCTTGAATGGACT 498696 Query 183115 AGAACTCCGGAAGATGCTTTGAGTTATAGTATCTATATGAACAATAAGTACGAACTAGAC 183174 ||||||||| | || || || ||| | ||| | |||||| || ||| Sbjct 498695 GCCACTCCGGAACAAGCGCTGGAGTACGCGATCCTGCTTAACGACAAGTACAGTCTCGAC 498636 Query 183175 GGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGA 183234 ||| || || ||||| || || || ||||||||||| || | || | || || | Sbjct 498635 GGTCGAGACCCCAACGGTTATGTGGGATGTATGTGGTCGATCGGAGGCATTCATGACATG 498576 Query 183235 GCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAG 183294 | ||||| || | |||| || || ||| | | | |||||| ||| || | | ||| Sbjct 498575 GGCTGGAAGGAGCGGGCTATCTTCGGTAAGGTTCGGTTTATGAACTATCAGGGCTGCAAG 498516 Query 183295 AAGAAATTTGATGT 183308 || || ||||| Sbjct 498515 CGAAAGTTCGATGT 498502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903346222149440