Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5380 107 5e-18 >seq5380 Length=870010 Score = 107 bits (118), Expect = 5e-18 Identities = 178/254 (70%), Gaps = 5/254 (2%) Strand=Plus/Minus Query 110681 TGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCA---AGG 110737 ||| || ||||| ||| | || ||||| ||| || |||| |||||| |||| ||| Sbjct 559037 TGGTCTGGTTCCCATGCTGAGGGTCTTTAACAACGTTGCACGGTATGTGGATCAGGGAGG 558978 Query 110738 TGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGA 110797 || ||| | |||| | |||||||| || || || || |||||||| ||| | || || Sbjct 558977 CGGCAAGCGTCCTGGCGCCTTTGCTATTTACCTGGAGCCATGGCATTCGGATGTCTTCGA 558918 Query 110798 ATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTA 110857 ||| | || || ||||| ||| ||||| | | ||||| || ||||| || Sbjct 558917 GTTCCTCGAGCTCAAGAAAAACACCGGAAAGGAAGAGAATCGTGCACGCGACTTATTCTA 558858 Query 110858 TGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATG-GCATGTGGTCTC 110916 || ||||||| | ||| | |||||||||||||| | | || | | || ||||| | Sbjct 558857 CGCCTTGTGGATACCCGATCTCTTCATGAAACGTGTAGAGGCCAACGAGGAT-TGGTCCC 558799 Query 110917 TTATGTGTCCTCAT 110930 | |||||||||||| Sbjct 558798 TCATGTGTCCTCAT 558785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186725304451594