Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4595 123 6e-23 seq5446 98.7 2e-15 seq5380 87.8 4e-12 >seq4595 Length=987418 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || |||||| |||| ||||| || ||||| |||| Sbjct 267796 AAGACCCTGACCGGAAAGACCATCACTCTGGAGGTGGAGCCATCGGACACCATCGAGAAT 267737 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || || |||||| || || || | || |||||| Sbjct 267736 GTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTC 267677 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | ||||||||| | |||||| ||||||||||| ||||||| ||||| Sbjct 267676 GCCGGCAAGCAGCTTGAAGATGGACGCACTTTGTCCGATTACAACATCCAGAAGGAGTCA 267617 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||| | || ||| | || || Sbjct 267616 ACCCTCCACTTGGTCTTGCGTCTCCG 267591 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || |||||| |||| ||||| || ||||| |||| Sbjct 268480 AAGACCCTCACCGGAAAGACCATCACTCTGGAGGTGGAGCCATCGGACACCATCGAGAAT 268421 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || || |||||| || || || | || || ||| Sbjct 268420 GTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATTTTC 268361 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | |||||| |||| |||||| ||||||| || || Sbjct 268360 GCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGTCCGACTACAACATCCAGAAGGAATCA 268301 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||| | || ||| | || || Sbjct 268300 ACCCTCCACTTGGTCTTGCGTCTCCG 268275 Score = 96.9 bits (106), Expect = 8e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || |||||| |||| ||||| || ||||| |||| Sbjct 268024 AAGACCCTGACTGGAAAGACCATCACTCTGGAGGTGGAGCCATCGGACACTATCGAGAAT 267965 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || || || || || || |||||| || || || | || |||||| Sbjct 267964 GTAAAGGCCAAAATCCAGGACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTC 267905 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | |||||||| | ||| || | |||||||| ||||||| |||||| Sbjct 267904 GCCGGCAAGCAGCTTGAAGATGGGCGCACTCTGTCTGATTACAATATCCAGAAGGAGTCT 267845 Query 206365 ACT 206367 ||| Sbjct 267844 ACT 267842 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/228 (69%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || | || |||||||| || || |||| || || Sbjct 268726 AAAATG---CAGATCTTTGTGAAGACCTTGACTGGAAAAACCATTACCCTGGAGGTTGAG 268670 Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 || || || |||| || ||||| ||| ||||| || || || |||||| || Sbjct 268669 CCCTCCGATACGATCGAGAATGTGAAAGCCAAA-ATTCAGGACAAGGAGGGAATTCCTCC 268611 Query 206283 GGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 || || | || ||||||||||| |||||| | || || || | |||||| |||| Sbjct 268610 AGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGTCCGA 268551 Query 206343 TTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| ||||||| ||||| || || ||| | || ||| | || || Sbjct 268550 CTACAACATCCAGAAGGAGTCAACCCTCCACTTGGTCTTGCGTCTCCG 268503 >seq5446 Length=1541693 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || || || ||||| |||||| ||| ||||| |||| Sbjct 1371303 AAAACCCTTACCGGCAAGACCATTACCTTGGAGGTGGAACCTTCGGACACCATCGAGAAT 1371244 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || ||||| || || || | || |||||| Sbjct 1371243 GTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAGCAGCGTCTCATCTTC 1371184 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| |||| |||||| | || || |||| |||||| ||||||| ||||| Sbjct 1371183 GCCGGCAAACAGCTGGAGGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCG 1371124 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 1371123 ACCCTCCAC 1371115 >seq5380 Length=870010 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| | || || ||| || || || ||||| Sbjct 656597 AAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAACCGTCGGATACTATCGAAAAT 656656 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || |||||||||||| || || || | || ||||| Sbjct 656657 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTT 656715 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| |||||||||| | || | | ||||| ||| | ||||| ||||| Sbjct 656716 CGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGATTATAACATTCAGAAGGAGTC 656775 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | ||| | || | ||||||| Sbjct 656776 CACTTTGCACTTGGTGCTCCGACTTCG 656802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181733672477434