Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5380 242 4e-59 seq5649 138 1e-27 seq4595 113 4e-20 seq5446 96.9 3e-15 >seq5380 Length=870010 Score = 242 bits (268), Expect = 4e-59 Identities = 835/1279 (65%), Gaps = 31/1279 (2%) Strand=Plus/Plus Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631 || || || |||||||||| ||| ||||| || ||||| || ||| | ||| |||| | Sbjct 557613 GCTGCCGGCTTTGTGCGCAGATAGTACATTCCGGTTTTAAGCCCAGCTTTCCAGGAGTAA 557672 Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGG 146691 ||| || || || | | |||| | ||||| ||||| || || || || ||| Sbjct 557673 AAGTGTATGGACGTAAGCTTTCCGTAGTTTGGCTCTGCCACATGAATGTTGAAGGACTGG 557732 Query 146692 CTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTCATT 146751 |||||||| |||||||| || || || ||||| | ||| | || ||| Sbjct 557733 CTTTGATCGATGAAAGCACCTCGATCAGCGGCCATTTTAATAGTAGACTTCACAGAGATT 557792 Query 146752 TCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAATA 146811 ||||| |||||||||| || | || | | || || |||| ||||||||||| Sbjct 557793 TCCCACACGGTTTTGTAAAGATCTCGGACCTTCTGCGGGATGGCTTCGATGTTTTGAATG 557852 Query 146812 GAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGGCGTGTAA-AGGTTTAGTTTAA 146869 |||||| || | || || || ||| | || || ||| | | || | || | Sbjct 557853 GAGCCCCTGCTGGAAATTATT-TGGTTCTTCATATCAT-CGTCCCACAAGTCCAATTCAG 557910 Query 146870 TGAGGTCA-TCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTG 146928 | ||||| |||| || | || |||||||||||||| ||||| | ||| || ||||| Sbjct 557911 TCAGGTCCCTCAAC-AAGTGATGGTTGACCACTTGAAATTCGCCGGACAGAACTCGTCTA 557969 Query 146929 AGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTG 146988 || | ||| | || | ||||| ||||| || || ||||| | || ||||| || Sbjct 557970 GTGTAAATATTAGTCGTATACGGCTCGAAAGATTCGTTGTTGCCCATAATCTGGGCAGTA 558029 Query 146989 GTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTG 147048 | ||| || ||||| ||||| | || || || | | ||||| | ||| Sbjct 558030 GATGCAGTGGGCATAGGAGCCACAAGCAGGGAGTTCCTGACACCGTGCTTCTTGATCGAC 558089 Query 147049 TCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGG 147108 ||||||| | ||||||||||||| || ||||| || ||||||||||||||| Sbjct 558090 TCCTTCAGTTTCTGCCAGTCCCACAGGTTCGTTGGCGTTTTGTCCCACATGTCGTACTGC 558149 Query 147109 AGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCC 147168 || | || ||| |||| || || | | || ||| || || || ||| Sbjct 558150 AGAATACCCTTACTTACGGGGCTCCCTTCATAGGTTTCGTATGGACCATCAATCTCAGCC 558209 Query 147169 AATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGG 147228 | ||||| || ||||| | || || ||||| || ||||| || || | || | Sbjct 558210 AGCTCACAACTGGCCTCCAAAGCGCCGTAGTAAATAGTTTCAAATATCTGCTGATTCAAA 558269 Query 147229 ACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCC 147288 | |||||||| || || || || | |||| || | ||||| || || |||||| Sbjct 558270 AGACCAGCTTCTTCACTTTCATAGGGGAATCGCATGAGAATCAAGGCGTCAGCGAAACCC 558329 Query 147289 TGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGA 147348 || | |||| ||| | || ||||| | ||| ||| || || | |||| Sbjct 558330 TGAACTCCGATGCCCACGGGGCGATGTCTCAAATTGGATTTCTTTGCCTCCGGCAGGGGA 558389 Query 147349 TAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTG 147408 || | ||| ||| || |||||||| || || || || || | | ||| Sbjct 558390 TAATAGTTTATATCGATTATCTTGTTAAGATTTTTGGTGACCGTCTTGGTAACTTCTTTT 558449 Query 147409 AGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGT---ACGCATTGGTTCACGGCGATA 147465 ||||||| |||||| || ||||||| | || ||| | ||| | |||||| Sbjct 558450 AGTTTCTTGAAATCGTA-----CGTCTTC-TCGGGTGTGACGAACATGTTAAGGGCGATG 558503 Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCA 147524 || |||| ||||| || || |||| || |||| | ||||| |||||||| | ||| Sbjct 558504 GATGCCAAGTTGCATACTGCAATCTCATCTGGCG-CAGAGTACTCTACGATTTCTGTGCA 558562 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAA-ATTTTGCTGATTGCTTTTCCGATTGCACGCGT 147583 ||||||||||| || || | | |||| ||| ||||| ||||| ||||| ||||| || | Sbjct 558563 AAGGTTGCTGCACTTGAT-AGTGCCAACATTCTGCTGGTTGCTCTTCCGGTTGCAGGCAT 558621 Query 147584 CTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTAT 147640 |||| |||||||| || || || || || || |||| |||| || |||| Sbjct 558622 CTTTAAAGAGCATATAAGGATTTCCCGTTTCCACCTGCGCCTCAATAATCGCGAACC--- 558678 Query 147641 GCAGGTCCTGCGCTCGCACCCGCTGCCGATAG--CGGCCCTCGTTTTCGTACCGCTCGTA 147698 || | ||| || | | | || | | | | || ||||| | |||||| | ||| Sbjct 558679 ACAAGGACTGAGC-CTTAACTACT-CGGTTGGCACGACCCTCTTGCTCGTACTTCAAGTA 558736 Query 147699 CAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACAT 147758 || | ||||| |||||||| | |||| ||||||||| || | ||| |||||||| Sbjct 558737 CAGCTTTTCAAATTCGTCGCCCCAAACATCGTGAAGGCCGGGGCATTTATGAGGACACAT 558796 Query 147759 CAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGC 147818 || ||||| |||| || | || ||| ||| || ||||| || | ||||| || Sbjct 558797 GAGGGACCAATCCTCGTTGGCCTCTACACGTTTCATGAAGAGATCGGGTATCCACAAGGC 558856 Query 147819 GTA-CATAAGATCGCGCGC 147836 ||| ||||| ||||| || Sbjct 558857 GTAGAATAAG-TCGCGTGC 558874 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||| || || | ||| || |||||| ||||| || || | Sbjct 656775 GACTCCTTCTGAATGTTATAATCAGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCG 656716 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||||||||| || |||||||| || ||| || ||| | Sbjct 656715 AAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACA 656656 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | |||||| | ||| || || || | || | || || || || || || || Sbjct 656655 TTTTCGATAGTATCCGACGGTTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTA 656596 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 656595 ACGAAGATCTGCAT 656582 >seq5649 Length=2333656 Score = 138 bits (152), Expect = 1e-27 Identities = 233/337 (69%), Gaps = 3/337 (1%) Strand=Plus/Plus Query 51541 CAATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCG 51600 |||| || |||| ||||||||||| || | || | ||||||||||| |||||||||| Sbjct 452530 CAATGCCAATGACGCCGCAGCCGATGCGGGCACCAGCGTTGCCCGTGGACTTGCTCAGCT 452589 Query 51601 GATGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGA 51660 || | ||||||||| ||| | ||||| ||||||| |||| || | || Sbjct 452590 CGTGTCCACCCTTGCCGAGATCATCGGCATCGGCGTGGACCACCACGGTGCGTCCGATGA 452649 Query 51661 CGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGT 51720 ||| | ||||||| ||||| ||| |||| | ||| ||| | ||| | || Sbjct 452650 TGCTGTCGGCGCCGAAGAGCGTGATCTTCGAGTCGGTGATGTTCACCTTCGTGGGACAGT 452709 Query 51721 TGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAG 51780 | | | ||||||| ||||||| |||||| | ||||| || | || | || | Sbjct 452710 CGC---CGGTGGCCTCGATGTTGCCCAGGTCGCCCAGATGGCGATTCTCGTCGGTGGGTG 452766 Query 51781 CGCCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGG 51840 | ||||| || ||| | || || ||||| || | |||| |||| |||||| || Sbjct 452767 CACCGTGCTCCTTGCTGTACGGATTAAAGTGCGGCCCGGACGACATGCAACCGTTGGTGT 452826 Query 51841 TGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCC 51877 |||| ||||| ||||| || ||||||||||||||||| Sbjct 452827 TGTCTCCGAACTCGTGAACATGGAATCCGTGCAGGCC 452863 >seq4595 Length=987418 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | ||||||| || || |||||||||||| || ||||| Sbjct 268509 CGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACCG 268568 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| |||||||| ||||||||||| || || || || Sbjct 268569 TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTG 268628 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||||| | || | ||||||| ||||| || || | || | Sbjct 268629 TCCTGAATTTTGGCTTTCACATTCTCGATCGTATCGGAGGGCTCAACCTCCAGGGTAATG 268688 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| || || | || |||||||| Sbjct 268689 GTTTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 268723 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | ||||||| || || |||||||| ||| || || || | Sbjct 267597 CGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCA 267656 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| |||| |||||||| ||||||||||| || || || ||| Sbjct 267657 TCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTA 267716 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || |||| | || | || || | |||||||| || | || | Sbjct 267717 TCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTGATG 267776 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| || || | ||| |||||||| Sbjct 267777 GTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 267811 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | || || || || |||||||||||| || || || | Sbjct 268053 CGCAAGACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGTCCA 268112 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | |||| |||||||| ||||||||||| || || || || Sbjct 268113 TCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTG 268172 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| |||| | || | || || | |||||||| || | || | Sbjct 268173 TCCTGGATTTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTGATG 268232 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || ||||| || || | ||| ||||||||| Sbjct 268233 GTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCATG 268268 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||| || || || ||||| || || || ||| |||||| Sbjct 267831 ACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAATCAGACAGAGTGCGCCCATCTTCA 267890 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| |||| |||||||| ||||||||||| || || || || || Sbjct 267891 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGG 267950 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | || | ||| || | |||||||| || | || | || || Sbjct 267951 ATTTTGGCCTTTACATTCTCGATAGTGTCCGATGGCTCCACCTCCAGAGTGATGGTCTTT 268010 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 |||||||| || || | ||| ||||||||| Sbjct 268011 CCAGTCAGGGTCTTCACGAAGATCTGCATG 268040 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | |||| || || || |||||||||||| || ||||| Sbjct 268281 CGCAAGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACCG 268340 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| | || |||||||| ||||||||||| || || || ||| Sbjct 268341 TCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTA 268400 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || |||| | || | || || | |||||||| || | || | Sbjct 268401 TCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTGATG 268460 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || || || | ||| |||||||| Sbjct 268461 GTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 268495 >seq5446 Length=1541693 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | ||||| || | | | ||||| || || |||||||||||| || ||| Sbjct 1371097 ACGCAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 1371156 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || |||||||| |||| |||| |||||||| |||||||| || || || Sbjct 1371157 GCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCC 1371216 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| ||| || |||| | || | || || | || ||||| || | Sbjct 1371217 CTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGTTCCACCTCCAA 1371276 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || || || ||||| | ||| || |||||| Sbjct 1371277 GGTAATGGTCTTGCCGGTAAGGGTTTTAACGAAGATTTGCATG 1371319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476576919739440