Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq5653 111 1e-19 >seq5653 Length=912194 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 5333 AGAAGCACTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTT 5392 ||| || ||||||||||| ||| || | ||| || || ||| |||| |||| | | | Sbjct 473920 AGATGCGCTCGCAGATGAACTGGGCAATGCGATCCCCGCGCTTCACCTCGAACTCCACGT 473861 Query 5393 GGCCGAA--GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCC 5450 |||| |||||| | ||| || || ||||| || ||| | ||| || || ||||| Sbjct 473860 --CCGAGTGGTTGAACAACACGACACCAAGGTTGCCGCGGTAATCCTCATCGACCACGCC 473803 Query 5451 CGCTCCCACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGACCGTA 5510 || |||||||| | |||||| || || ||||| ||||||| || ||||| || ||||| Sbjct 473802 GGCGCCCACATCGATGAAGTTCTTAACGGCGAGTCCGGACCGTGGAGCCACCCGGCCGTA 473743 Query 5511 GCAGCCGTATGGCGGGTGGATCTGCAGATCGGTC 5544 | || | || |||| ||||||||||||| Sbjct 473742 CGAACCCTCCGGAACCTGGACCTGCAGATCGGTC 473709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447778991179440