Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq5380 172 5e-38 >seq5380 Length=870010 Score = 172 bits (190), Expect = 5e-38 Identities = 722/1104 (65%), Gaps = 42/1104 (4%) Strand=Plus/Plus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 ||||||||| || || | || || || || || || | |||||||||||| || || || Sbjct 557591 CACGGTGAACTGAATGGCGTTTGCTGCCGGCTTTGTGCGCAGATAGTACATTCCGGT-TT 557649 Query 136698 TAAACCCTTCTC-CCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGG 136756 ||| ||| || |||||| ||| ||||| || | | || ||| | || || | Sbjct 557650 TAAGCCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTAAGCTTTCCGTAGTTTGGCTCTG 557709 Query 136757 CCACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGT 136816 |||| || || | || ||||| ||||||||| ||| || || || |||||||| | Sbjct 557710 CCACATGAATGTTGAAGGACTGGCTTTGATCGATGAAAGCACCTCGATCAGCGGCCATTT 557769 Query 136817 TCAATAGTACTTTTTGCTTA-ATTTCCCAAGCGGTTTT--AAAGAGCTCCTTGACATTGG 136873 | ||||||| || | | |||||||| ||||||| ||||| ||| ||| || Sbjct 557770 T-AATAGTAGACTTCACAGAGATTTCCCACACGGTTTTGTAAAGATCTCG--GACCTTCT 557826 Query 136874 GCGGAATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTTTCATCATGAGAT 136933 |||| || | ||||| || || | || || || | || |||| || | | || Sbjct 557827 GCGGGATGGCTTCGATGTTTTGAATGGAGCCCCTGCTGGAAATTATTTGGTTCTTCATAT 557886 Query 136934 CAGTCGAGT-ATACGTTGCTCTCTATGAGTTTA-TCGACGAGATGCTGATTTACTACTTG 136991 || ||| | | || || | || | || || || || || || || ||||| Sbjct 557887 CA-TCGTCCCACAAGTCCAATTCAGTCAGGTCCCTCAACAAG-TGATGGTTGACCACTTG 557944 Query 136992 ATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTC 137051 | ||||||| || || |||| | ||| | |||| | || |||||||||| ||||| Sbjct 557945 AAATTCGCCGGACAGAACTCGTCTAGTGTAAATATTAGTCGTATACGGCTCGAAAGATTC 558004 Query 137052 GTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATT 137111 |||||| |||| |||||| ||||| | || || ||||| ||| | | || || || Sbjct 558005 GTTGTTGCCCATAATCTGGGCAGTAGATGCAGTGGGCATAGGAGCCACAAGCAGGGAGTT 558064 Query 137112 CCGTAAACCGTG-TACGGCCAATTG-TTGCTTGAGCTCTTTCCAGTTCCACAGATTGTTC 137169 || | |||||| | | || | | ||| || | | ||||| |||||| |||| Sbjct 558065 CCTGACACCGTGCTTC--TTGATCGACTCCTTCAGTTTCTGCCAGTCCCACAG---GTTC 558119 Query 137170 GATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCA 137229 | | | ||| | | ||||| || |||||| || || |||| | || || || || Sbjct 558120 GTTGGCGTTTTGTCCCACATGTCGTACTGCAGAATACCCTTACTTACGGGGCTCCCTTCA 558179 Query 137230 TAAGAATCATATGTTCCGTGCAGTTTC-GCCAGTTCAATACTCTGGACT--AGTGCGCCA 137286 || | || |||| || | || | || ||||| ||| | |||| || | ||||| Sbjct 558180 TAGGTTTCGTATGGACCAT-CAATCTCAGCCAGCTCACAA--CTGGCCTCCAAAGCGCCG 558236 Query 137287 TAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGC 137346 |||||||||||||| | || | |||||| | |||||||| || || ||||| Sbjct 558237 TAGTAAATAGTTTCAAATATCTGCTGATTCAAAAGACCAGCTTCTTCACTTTCATAGGGG 558296 Query 137347 ATATC-CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTG 137405 | ||| || | | || || || || | || |||| ||||| || | || | || Sbjct 558297 A-ATCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACTCCGATGCCCACGGGGCGATG 558355 Query 137406 TTTAAAATTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTATT 137465 | | ||||| ||| | | || || |||||| ||||| || || || | || Sbjct 558356 TCTCAAATTGGATTTCTTTGCCTCCGGCAGGGGATAATAGTTTATATCGATTATCTTGTT 558415 Query 137466 GAGATTGTTAGT-AACGACTCTGGACACTTTGTAGAGCAATTCGAAATCGAAGCTTTTAG 137524 ||||| || || | || || ||| |||| | || | ||||||| | | || Sbjct 558416 AAGATTTTTGGTGACCGTCT-TGGTAACTTCTTTTAGTTTCTTGAAATCGTACGTCTT-- 558472 Query 137525 ACT-GTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTCT 137583 || | ||| | | || | || | ||| || || || ||||||||||| || | || Sbjct 558473 -CTCGGGTGTGA-CGAACATGTTAAGGGCGATGGATGCCAAGTTGCATACTGCAATCTC- 558529 Query 137584 GTAT-TGTCGC--TGTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCC 137640 || || ||| ||| | ||| ||||| | |||||| |||||| ||| | | || Sbjct 558530 --ATCTGGCGCAGAGTACTCTACGATTTCTGTGCAAAGGTTGCTGCACTTGAT-AGTGCC 558586 Query 137641 AA-ATTCTTTTGATTGTTTTTCTCGTTGACGTGATCTTTATATATCATATACGGAGTTCC 137699 || ||||| || ||| | ||| |||| | ||||||| | | |||||| ||| |||| Sbjct 558587 AACATTCTGCTGGTTGCTCTTCCGGTTGCAGGCATCTTTAAAGAGCATATAAGGATTTCC 558646 Query 137700 GGTTTCGACTTGAGTCTCAACAAT 137723 ||||| || || | ||||| ||| Sbjct 558647 CGTTTCCACCTGCGCCTCAATAAT 558670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445062386585280