Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5351 203 5e-46 seq5655 104 3e-16 seq1583 98.7 1e-14 seq5414 93.3 6e-13 >seq5351 Length=991022 Score = 203 bits (224), Expect = 5e-46 Identities = 339/482 (70%), Gaps = 6/482 (1%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| |||||||| || ||||||| |||||||| ||||| | ||| | | ||| Sbjct 258092 AGGCTGAGGCCTCTTTCTGGACCGTGGAGGAGGTGGACCTGTCCAAGGACCTGACCGACT 258033 Query 1455856 GGGTGTCGCT-GAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 || |||| || |||||||||||||| || || |||||| | ||||| || ||| Sbjct 258032 GGCAC-CGCTTGAAGGACGACGAGCGCCACTTTATTTCGCACGTGTTGGCCTTCTT-CGC 257975 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 ||| ||||||||| || ||||| |||| | ||||| | | ||||| || | Sbjct 257974 AGCCTCCGATGGCATTGTCAATGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGAT 257915 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 ||||||| || | || ||||| |||||||||||||| || ||| | ||||| || | Sbjct 257914 CACAGAGGCCCGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGAT 257855 Query 1456035 CTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCG 1456094 ||| | ||||||||||| ||| || || ||| | || || |||| || Sbjct 257854 GTACAGTGTGCTGATCGACACATACATCCGCGATCCGCACCAGCGAGAGTACCTGTTCAA 257795 Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 ||||||||| ||| ||||| |||||| | ||||| |||||||| ||| |||||| Sbjct 257794 CGCCATCGAAACGATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCCATGTCCTGGATC-T 257736 Query 1456155 CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATC 1456213 | | | | | | |||| | ||||| || ||| |||||||| ||| || |||||| Sbjct 257735 CCTCCAAGTCAGCCA-ACTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAAGGCATC 257677 Query 1456214 TTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 || ||| ||||| ||| | |||| || ||||| |||||||| ||||| ||||| || Sbjct 257676 TTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGAGGCCTGATGCCGGGA 257617 Query 1456274 CT 1456275 || Sbjct 257616 CT 257615 >seq5655 Length=3709542 Score = 104 bits (114), Expect = 3e-16 Identities = 229/341 (67%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 332878 CAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCCAG 332937 ||| ||||||||||| || | || |||||||| | || ||||||||||||| Sbjct 1365036 CAGCATGGCACAACGCGATTGGATGGGCTCGATGATCTTTTCGCTGGTGTTGCAGGCCAA 1365095 Query 332938 GGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGTTGGGCCG 332996 || || |||||||| ||| | | | |||||||| ||| || || || || || || Sbjct 1365096 CGCGAATCGCGTCGTGTTGCTGTAAATCTCCATGGTGCGA-CGAAGAGCTTGCTGCGCTC 1365154 Query 332997 CCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAGAT 333056 || ||| | || || |||||||| ||||| | ||||| || | ||| | || ||| Sbjct 1365155 CCTCCGTCATGCTATCCGCCTCGTCTAGGATCACAATCTTATGTCTACCGCGTGGAAGAG 1365214 Query 333057 CAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGCTCGT 333116 |||| ||| | ||| ||||| | |||||||| || || | || ||||| | Sbjct 1365215 TAACCTTTTGCTGGGCAAACATCTTGATTTTGTTGCGCACCACATCAATTCCTCGCTCAT 1365274 Query 333117 CCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCGCGCCA 333176 || || ||||| ||||| || ||||| | | | || | |||| | |||| Sbjct 1365275 TGGAAGCATTGAGCTCGAGGACTGCCTCCTTGTAACTATCTCCTAGAAGGATTCTTGCCA 1365334 Query 333177 GGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 |||| ||| | || ||||||||| || ||||||||| Sbjct 1365335 GGCATTGAATGGTGGTTGTCTTGCCCACTCCAGGCGGACCC 1365375 >seq1583 Length=11539 Score = 98.7 bits (108), Expect = 1e-14 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| ||||||||||| || ||||||||||| |||| || || | | ||| || | Sbjct 8351 CCATGACGATCATGAACAGCTTCGTCAACGACATCTTCGAGCGGATTGCCGGCGAAGCTG 8410 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 |||| ||||| | | ||||||| || ||| ||| || ||||| |||||||||| Sbjct 8411 GTCGGCTGGCCCAGTACAACAAGAAATCTACCATCAGCAGTCGTGAGATACAGACCGCCG 8470 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||| | | | || || || || | ||||||||| |||||||||| Sbjct 8471 TGCGCCTTCTTCTTCCAGGGGAGCTTGCTAAGCACGCCGTGAGTGAGGGCACCA 8524 >seq5414 Length=687357 Score = 93.3 bits (102), Expect = 6e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1818069 ATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACG 1818128 ||| |||||||||| || ||||||| ||||| | ||| | | || ||||| Sbjct 306875 ATGTTAAAGGGCGTAACCAGCTCGGGGAAGGTCAAGTTCTGGGCAATGGAGCGCGGCACA 306934 Query 1818129 CCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTG 1818188 || |||| ||| ||| | | || ||||| ||||||||| || || | |||| Sbjct 306935 CCGACCTGGTCGATGCGCAGATTTGGATCGGGAGTGATGACGGTACGGGCAGAGAAGTCC 306994 Query 1818189 ACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCCACG 1818248 || || |||||||| || || ||||||||||||||||||||||||| ||| || Sbjct 306995 ACACGTTTGCCCATAAGGTTTCCACGGATCCTGCCCTCCTTGCCCTTGAGACGCGCCTTA 307054 Query 1818249 AGGCCCTTGGTGGGCTTGCCCGAC 1818272 | | |||| |||||||||||| Sbjct 307055 ATGGCCTTCAGCGGCTTGCCCGAC 307078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177256216124148