Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq5614 149 6e-31 seq4595 122 8e-23 seq4758 116 3e-21 seq5380 95.1 1e-14 seq5446 86.0 6e-12 >seq5614 Length=3457230 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | || |||||||| || ||| ||||||||| |||||||| |||| | Sbjct 1201155 CCACCACGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCGGAC 1201096 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || |||||||| || ||||| ||||| ||||||||||| | ||| Sbjct 1201095 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1201036 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | | | | | || ||| | || ||| Sbjct 1201035 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACC 1200976 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || |||||||| || ||||| |||||||| Sbjct 1200975 TCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200929 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||||| || ||| ||||||||| |||||||| || | | Sbjct 1200927 CCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGAC 1200868 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || |||||||| || ||||| ||||| ||||||||||| | ||| Sbjct 1200867 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1200808 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | | | | | || ||| | || ||| Sbjct 1200807 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACC 1200748 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || |||||||| || ||||| |||||||| Sbjct 1200747 TCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200701 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||||| || ||| ||||||||| |||||||| || | | Sbjct 1200699 CCACCACGCAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGAC 1200640 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || |||||||| || ||||| ||||| ||||||||||| | ||| Sbjct 1200639 AGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 1200580 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | | | | || ||| | ||| ||| Sbjct 1200579 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGTTCGACC 1200520 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || ||||| || ||||| |||||||| Sbjct 1200519 TCCAAGGTGATGGTCTTGCCGGTTAAAGTCTTGACAAAGATCTGCAT 1200473 >seq4595 Length=987418 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || || ||| |||||| || ||||||||||||| ||| || || |||| || Sbjct 267374 CACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCGTCCTC 267433 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||| ||||| || || || ||||| |||||||| || | ||| | | |||||||||| Sbjct 267434 CAGTTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTG 267493 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||| || ||||| | | | ||||| || || ||||||| ||||| ||||| Sbjct 267494 GATTTTGGCCTTCACGTTCTCAATAGTGTCCGACGGCTCTACCTCCAGAGTGATGGTTTT 267553 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || ||||| || |||||||| Sbjct 267554 TCCGGTAAGGGTCTTCACGAAGATCTGCAT 267583 Score = 118 bits (130), Expect = 1e-21 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | || |||||| || ||||||||||||| | Sbjct 267585 CCACCACGGAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGAC 267644 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || |||||||| || || || |||| |||||||| || | |||| Sbjct 267645 AAAGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 267704 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT---TCC 35686 | | |||||| || ||||| ||||| | | | | ||||| |||| ||| Sbjct 267705 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTC---CGATGGCTCC 267761 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||||| ||||| || || || |||| || ||||| || |||||||||| Sbjct 267762 ACCTCCAGAGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCATTC 267813 >seq4758 Length=893088 Score = 116 bits (128), Expect = 3e-21 Identities = 199/289 (69%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 44131 TGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGTA 44190 |||||||| | || || || || | || || || ||||||||| | | | |||| Sbjct 498787 TGTGGAACTCCGCGCAGTTGCAGTTGGTACGCGAGGGAAAAATGCACGGCTTCCTCCGTA 498728 Query 44191 TGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCGCGCTCGTTCATG 44250 |||| ||| ||| ||||| | || ||| | | | || || ||||| | | | Sbjct 498727 TGTACTGGGCCAAAAAGATCCTTGAATGGACTGCCACTCCGGAACAAGCGCTGGAGTACG 498668 Query 44251 CCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGGAT 44310 | ||| || ||||||||||||||| | |||||||| ||||||||||| || || |||| Sbjct 498667 CGATCCTGCTTAACGACAAGTACAGTCTCGACGGTCGAGACCCCAACGGTTATGTGGGAT 498608 Query 44311 GTATGTGGTCCATTTGCGGTGTCCACGACAGGGCGTGGCGAGAGCTACCCATCTACGGCA 44370 |||||||||| || | || | || |||| || ||| |||| | |||| ||| | Sbjct 498607 GTATGTGGTCGATCGGAGGCATTCATGACATGGGCTGGAAGGAGCGGGCTATCTTCGGTA 498548 Query 44371 AAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGTAAA 44419 | || || | |||||||| | || ||| ||||||| ||||| || Sbjct 498547 AGGTTCGGTTTATGAACTATCAGGGCTGCAAGCGAAAGTTCGATGTGAA 498499 >seq5380 Length=870010 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || || || |||||| |||||||| ||||| | Sbjct 656808 CCACCACGAAGTCGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGAG 656749 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| || || || |||| |||||||| || | |||| Sbjct 656748 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 656689 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || |||||| ||||| || | | || | | || || || ||| ||| Sbjct 656688 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACC 656629 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||| | || || || || |||||||| Sbjct 656628 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 656582 >seq5446 Length=1541693 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || |||||| || |||||||| |||| | Sbjct 1371092 CCACCACGCAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1371151 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || |||||||| || || || || || | |||||||| || | || Sbjct 1371152 AGGGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 1371211 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||| ||| ||||| ||||| | | | | ||||| | ||||||| Sbjct 1371212 ATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGTTCCACC 1371271 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || || | ||||| || || || ||||| Sbjct 1371272 TCCAAGGTAATGGTCTTGCCGGTAAGGGTTTTAACGAAGATTTGCAT 1371318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450761176670320