Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4595 125 7e-24 seq5380 123 3e-23 seq5446 118 1e-21 seq5614 104 2e-17 seq5351 95.1 1e-14 >seq4595 Length=987418 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| ||||| || | ||| || || |||||||| || |||||||||||| Sbjct 268269 CCACCACGGAGACGCAAGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAC 268328 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||| || ||||| ||||| || ||||||| |||||||||||| || || Sbjct 268329 AAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGA 268388 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || |||||||| || || || || | ||||| || | ||||| Sbjct 268389 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACC 268448 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || ||||| | || || ||||| || ||||| Sbjct 268449 TCCAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 268495 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| ||||| || | ||| || || || ||||| || |||||||||||| Sbjct 268497 CCACCACGGAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 268556 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||| || ||||| ||||| || || |||| |||||||||||| || || Sbjct 268557 AAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 268616 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || |||||||| ||| || || | || ||||| | || || Sbjct 268617 ATTCCCTCCTTGTCCTGAATTTTGGCTTTCACATTCTCGATCGTATCGGAGGGCTCAACC 268676 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || ||||||||||| || || || || || || || || ||||||||| Sbjct 268677 TCCAGGGTAATGGTTTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTTG 268727 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| | ||| || | ||| | ||| | || || ||||| || |||||||| ||| Sbjct 267356 TCCTCCGCGGAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAATCGGA 267415 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | ||| || ||| || || || ||||| || |||||||||||||||||||| || || Sbjct 267416 CAAAGTGCGACCGTCCTCCAGTTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGG 267475 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || || ||||| || || || | ||||| |||| || || Sbjct 267476 GATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATAGTGTCCGACGGCTCTAC 267535 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| |||||||| ||||| | || || ||||| || ||||| Sbjct 267536 CTCCAGAGTGATGGTTTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 267583 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| ||||| || | ||| || || |||||||| || |||||||||||| Sbjct 268041 CCACCACGGAGACGCAAGACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAC 268100 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| ||||| |||| |||||||||||| || || Sbjct 268101 AAAGTGCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGA 268160 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || ||||| || || || | ||||| || | ||||| Sbjct 268161 ATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACC 268220 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || ||||| | || || ||||| || ||||| Sbjct 268221 TCCAGAGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 268267 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| ||||| || | ||| || || || ||||| || |||||||| ||| Sbjct 267585 CCACCACGGAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGAC 267644 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| || || |||| |||||||||||| || || Sbjct 267645 AAAGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 267704 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || |||||||| || || || || | ||||| || | ||||| Sbjct 267705 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACC 267764 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| ||||| || ||||| | || || ||||| || |||||| Sbjct 267765 TCCAGAGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCATT 267812 >seq5380 Length=870010 Score = 123 bits (136), Expect = 3e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | ||| | ||| | ||||| ||||| |||||||| || || | |||| || Sbjct 656799 AGTCGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGAGAGGGTGCGA 656740 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||||||| || || || |||||| Sbjct 656739 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 656680 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || |||||| || | || || |||| ||| || || || || Sbjct 656679 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGGGTG 656620 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721 ||||| || || || | || |||||||| || ||||| |||| || Sbjct 656619 ATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTATT 656574 >seq5446 Length=1541693 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || || || ||||| || |||||||||||| | |||| | Sbjct 1371101 AGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 1371160 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||||||||| || || || | |||||||||||| || || || || || Sbjct 1371161 CCATCCTCCAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCC 1371220 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || || | ||||| || | |||||| || | ||| Sbjct 1371221 TTATCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGTTCCACCTCCAAGGTA 1371280 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | ||||||||||| |||||||| Sbjct 1371281 ATGGTCTTGCCGGTAAGGGTTTTAACGAAGATTTGCAT 1371318 >seq5614 Length=3457230 Score = 104 bits (114), Expect = 2e-17 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGA--GTCGTCGAGCTGTTTGC 134574 || || |||||||| ||||||||||| | || | ||| | ||| || ||||| |||| Sbjct 1200669 GTAGACTCCTTTTGGATGTTGTAGTC--CGACAGAGTGCGTCCGTCCTCAAGCTGCTTGC 1200612 Query 134575 CTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTT 134634 | ||||| ||||| |||||||| || || || || || || || || || || || | Sbjct 1200611 CAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCT 1200552 Query 134635 TGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAG 134694 |||| || | || ||||| | ||| || || | || ||||| || |||||||||| Sbjct 1200551 TGACGTTCTCAATGGTATCGGAGGGTTCGACCTCCAAGGTGATGGTCTTGCCGGTTAAAG 1200492 Query 134695 TTTTAACGAAAATTTGCATTTTG 134717 | || || || || ||||| ||| Sbjct 1200491 TCTTGACAAAGATCTGCATATTG 1200469 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || || |||||||| |||||||||||| | ||| | ||| || ||||| ||||| Sbjct 1201125 GTAGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCAAGCTGCTTGCCA 1201066 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| ||||| |||||||| || || || || || || || || || || || ||| Sbjct 1201065 GCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTG 1201006 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | || ||||| | || || || | || ||||| || ||||| ||||| Sbjct 1201005 ACATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAAAGTC 1200946 Query 134697 TTAACGAAAATTTGCAT 134713 || || || || ||||| Sbjct 1200945 TTGACAAAGATCTGCAT 1200929 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAG--AGTCGTCGAGCTGTTTGC 134574 || || |||||||| |||||||||| || || | ||| | ||| || ||||| |||| Sbjct 1200897 GTAGACTCCTTTTGGATGTTGTAGT--CCGACAGAGTGCGTCCGTCCTCAAGCTGCTTGC 1200840 Query 134575 CTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTT 134634 | ||||| ||||| |||||||| || || || || || || || || || || || | Sbjct 1200839 CAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCT 1200780 Query 134635 TGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAG 134694 |||| || | || ||||| | || || || | || ||||| || ||||| |||| Sbjct 1200779 TGACATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAAAG 1200720 Query 134695 TTTTAACGAAAATTTGCAT 134713 | || || || || ||||| Sbjct 1200719 TCTTGACAAAGATCTGCAT 1200701 >seq5351 Length=991022 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 21423 CTTGTATTCGCCGACCCGTCTT-TCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTT 21481 || ||||||||| ||| |||| || || || ||||| || || || || | ||| | | Sbjct 257269 CTGGTATTCGCCAACCT-TCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGCGAAATCATCT 257327 Query 21482 TCATAAAATTAAAAGGATTGCTGGCGTAAAAACACCTTTCTTCGTTCAATTCCACGCACA 21541 ||| || ||||| || || ||| || | | || | || ||| ||||| || Sbjct 257328 CCATGAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACCAGCA 257387 Query 21542 AACGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATGCCCAACAGAT 21601 |||| || |||||||| || || || || |||| |||||||||||||| | || | Sbjct 257388 AACGGTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATGCCGATAAGGT 257447 Query 21602 CGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTC 21650 || || || || ||||||| ||||||| ||| || |||||||| || Sbjct 257448 TCACTGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATC 257496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505362049220080