Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5380 152 4e-32 seq5446 104 2e-17 seq4595 95.1 1e-14 >seq5380 Length=870010 Score = 152 bits (168), Expect = 4e-32 Identities = 996/1579 (63%), Gaps = 55/1579 (3%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || |||||||| |||||||| || | |||||||| ||||||| ||| ||||| || Sbjct 557586 TTGTCCACGGTGAACTGAATGGCGTTTGCTGCCGGCTTTGTGCGCAGATAGTACATTCCG 557645 Query 130466 GTTTTGAGTCCAATTTTGTGTCCA----TAATTGTGGATGCTGCACATTGTTTGGTAATT 130521 ||||| || ||| ||| ||| ||| ||| ||| | || ||| || Sbjct 557646 GTTTTAAGCCCAGCTTT----CCAGGAGTAAAAGTGTATGGACGTAAGCTTTCCGTAGTT 557701 Query 130522 GGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGC 130581 || | ||||| ||||||| || || |||||| || ||||| || | || || Sbjct 557702 TGGCTCTGCCACATGAATGTTGAAGGACTGGCTTTGATCGATGAAAGCACCTCGATCAGC 557761 Query 130582 AGCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAAT 130641 ||||| | | | | || || ||||| |||| ||||| ||||| | | Sbjct 557762 GGCCATTTTAATAGTAGACTTCACAGAGATTTCCCACACGGTTTTGTAAAGATCTCGGAC 557821 Query 130642 GTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCG 130701 | | || ||| | || ||||| | || || ||| || |||| ||| Sbjct 557822 CTTCTGCGGGATGGCTTCGATGTTTTGAATGGAGCCCCTGCTGGAAATTATTTGGTTCTT 557881 Query 130702 CATACTTTTATCGT---ACAA-TCCAAG-CTGTACAAGATCTTTTACCAAATGATTATTA 130756 |||| | ||||| |||| ||||| | || || || | | ||| |||| || Sbjct 557882 CATA---TCATCGTCCCACAAGTCCAATTCAGTC--AGGTCCCTCAACAAGTGATGGTTG 557936 Query 130757 ATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCA 130816 | | |||||| || || | ||| || |||||| |||||| || |||| |||| || Sbjct 557937 ACCACTTGAAATTCGCCGGACAGAACTCGTCTAGTGTAAATATTAGTCGTATACGGCTCG 557996 Query 130817 AAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAAT 130876 || |||||||||||||| | || || || |||| ||| |||||||| ||||| | Sbjct 557997 AAAGATTCGTTGTTGCCCATAATCTGGGCAGTAGATGCAGTGGGCATAGGAGCCACAAGC 558056 Query 130877 AGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGA 130936 || || || | | ||||||| || |||| ||||| || | ||| ||||| || Sbjct 558057 AGGGAGTTCCTGACACCGTGCTTCTTGATCGACTCCTTCAGTTTCTGCCAGTCCCACAGG 558116 Query 130937 GAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTG 130996 || || | |||| |||||| || | || || || || ||||| |||| || Sbjct 558117 TTCGTTGGCGT---TTTGTCCCACATGTCGTACTGCAGAATACCCTTACTTACGGGGCTC 558173 Query 130997 GATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCT 131056 ||| | | |||||| || || | |||||| || || || |||||||| Sbjct 558174 CCTTCATAGGTTTCGTATGGACCATCAATCTCAGCCAGCTCACAACTGGCCTCCAAAGCG 558233 Query 131057 CCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAA 131116 ||||| ||||| ||||| || || | ||| || | |||| | || || || Sbjct 558234 CCGTAGTAAATAGTTTCAAATATCTGCTGATTCAAAAGACCAGCTTCTTCACTTTCATAG 558293 Query 131117 GGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTA 131176 || ||| ||| | ||| || ||||| |||| |||||| | || | |||||| || | | Sbjct 558294 GGGAATCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACTCCGATGCCCACGGGGCGA 558353 Query 131177 TGTTTTAAATTACATTTACGCGAACATTCGG--TGGGATAAAGGTTAATGTCAATTATTT 131234 ||| | ||||| |||| | | | ||| ||||||| ||| || || ||||| | Sbjct 558354 TGTCTCAAATTGGATTTCTTTG--CCTCCGGCAGGGGATAATAGTTTATATCGATTATCT 558411 Query 131235 TGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGC 131294 |||| | ||| || | | || || ||| | ||| | |||||| |||| Sbjct 558412 TGTTAAGATTTTTGGTGACCGTCTTGGTAACTTCTTTTAGTTTCTTGAAATCGTACGT-- 558469 Query 131295 CAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTT 131354 | ||| | | || || || | || || |||| || || ||||| | | Sbjct 558470 -CTTCTCGGGTGTGACGAACATGTTAAGGGCGATGGATGCCAAGTTGCATACTGCAATCT 558528 Query 131355 CGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCA 131414 | || | | |||| || ||||| | ||| | || |||| ||| || ||||| | Sbjct 558529 CATCTGGCGCAGAGTACTCTACGATTTCTGTGCAAAGGTTGCTGCACTTGATAGTGCCAA 558588 Query 131415 AATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCCC 131473 ||| || || ||||| || | | || | || || | | ||| || || | ||| Sbjct 558589 CATTCTGCTGGTTGCTCTT-CCGGTTGCAGGCATCTTTAAAGAGCATATAAGGATTTCCC 558647 Query 131474 GTTTCGACTTGAGTTTCAATAATGTATCGAAAGAGTTTTCGAG--CAGACAATTGA-TAT 131530 ||||| || || | ||||||| | |||| | | || | || || | || Sbjct 558648 GTTTCCACCTGCGCCTCAATAA--TCGCGAACCA-----CAAGGACTGAGCCTTAACTAC 558700 Query 131531 TTGTATTGGC-CG--CGTTTT--TCGTAATTTTCGTACAACGTTTCAAAGTTTTGG--CC 131583 | | ||||| || | | || ||||| || ||||| | ||||||| | | | || Sbjct 558701 TCG-GTTGGCACGACCCTCTTGCTCGTACTTCAAGTACAGCTTTTCAAATTCGTCGCCCC 558759 Query 131584 AAACGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTG 131643 |||| | || | ||| |||| |||||||| || ||||| | |||| Sbjct 558760 AAAC--ATCGTGAAGGCCGGGGCATTTATGAGGACACATGAGGGACCAATCCTCGTTGGC 558817 Query 131644 TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT 131703 || || || ||||| || | ||| || | ||| || ||||| || | || | || Sbjct 558818 CTCTACACGTTTCATGAAGAGATCGGGTATCCACAAGGCGTAGAATAAGTCGCGTGCACG 558877 Query 131704 TTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCA 131763 |||||||| | || | |||| || | | | || || || | |||| |||||| Sbjct 558878 ATTCTCTTCCTTTCCGGTGTTTTTCTTGAGCTCGAGGAACTCGAAGACATCCGAATGCCA 558937 Query 131764 GGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTACCGCCT---TGATTAACATGACG 131820 || |||| || | || | ||||| ||||| |||||| |||| |||| || Sbjct 558938 TGGCTCCAGGTAAATAGCAAAGGCGCCAGGACGCTTGCCGCCTCCCTGATCCACATACCG 558997 Query 131821 AACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCT 131880 | | |||||| | || | || |||||| ||| ||| |||| | | |||||||||| Sbjct 558998 TGCAACGTTGTTAAAGACCCTCAGCATGGGAACCAGACCATTGGAGGTGCCATTGGTGCC 559057 Query 131881 CTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGT 131939 ||| || |||| || || | || || || || ||||||||||| || |||| Sbjct 559058 GCAAATCGAGGTGCCCTTTGCCCGAATGCAATGCACATTCAGTCCAATACCACCTGCCG- 559116 Query 131940 ATTTAGAGATTAGTGCGCA 131958 |||| || || | ||||| Sbjct 559117 ATTTTGAAATCATGGCGCA 559135 >seq5446 Length=1541693 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || || || ||||||||| | Sbjct 1371092 CCACCACGCAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1371151 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || |||||||| |||||| | ||||||||||| ||||| || || Sbjct 1371152 AGGGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGG 1371211 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| |||||| |||| | || | ||||| | | ||| || Sbjct 1371212 ATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGTTCCACC 1371271 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||||| || || ||||| || ||||||||||| Sbjct 1371272 TCCAAGGTAATGGTCTTGCCGGTAAGGGTTTTAACGAAGATTTGCAT 1371318 >seq4595 Length=987418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | || || || || || || ||||||||| || | || || Sbjct 268509 CGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACCG 268568 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || |||||| | || |||||||| ||||| || || | ||||| || Sbjct 268569 TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTG 268628 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || ||| ||||| | || | || || | || ||||| || || || || Sbjct 268629 TCCTGAATTTTGGCTTTCACATTCTCGATCGTATCGGAGGGCTCAACCTCCAGGGTAATG 268688 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| || ||||||||||| ||||| Sbjct 268689 GTTTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 268723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424904600678448