Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5380 132 6e-26 seq5545 98.7 1e-15 >seq5380 Length=870010 Score = 132 bits (146), Expect = 6e-26 Identities = 888/1402 (63%), Gaps = 48/1402 (3%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| || || || || || || || || |||| || || |||| || || || || || Sbjct 557972 GTAAATATTAGTCGTATACGGCTCGAAAGATTCGTTGTTGCCCATAATCTGGGCAGTAGA 558031 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| || |||| | || ||| | | ||| | || |||||| || Sbjct 558032 TGCAGTGGGCATAGGAGCCACAAGCAGGGAGTTCCTGACACCGTGCTTCTTGATCGACTC 558091 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGC-TTGG--TTTCACCTTCCCACATGTCAAACTG 110883 ||| || | |||||| | | | |||| ||| ||||||||||| |||| Sbjct 558092 CTTCAGTTTCTGCCAGTCCCACAGGTTCGTTGGCGTTTTG---TCCCACATGTCGTACTG 558148 Query 110884 AAGCAC-CCCTTGGGACG--CGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTC 110940 || | ||||| || |||| || ||| ||||||| || | ||| | || Sbjct 558149 CAGAATACCCTT---ACTTACGGGGCTCCCTTCATAGGTTTCGTATGGACCATCAATCTC 558205 Query 110941 AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000 ||||| ||||| || ||||||| | ||| || || |||||||| || | ||| Sbjct 558206 AGCCAGCTCACAACTGGCCTCCAAAGCGCCGTAGTAAATAGTTTCAAATATCTGCTGATT 558265 Query 111001 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 111060 || ||||| || ||| | | | | || | ||| || | || |||| Sbjct 558266 CAAAAGACCAGCTTCTTCACTTTCATAGGGGAATCGCATGAGAATCAAGGCGTCAGCGAA 558325 Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA---CTTTCGCGCAGTCTC 111117 ||| ||||| || | || | || | |||| || ||| || |||| | | | | Sbjct 558326 ACCCTGAACTCCGATGCCCACGGGGCGATGTCTCAAATTGGATTTCTTTGCCTCCGGC-- 558383 Query 111118 AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 111177 | ||||||| | ||| | || || | ||| ||||||||||| || |||| || | Sbjct 558384 -AGGGGATAATAGTTTATATCGATTATCTTGTTAAGATTTTTGGTGACCGTCTTGGTAAC 558442 Query 111178 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGC 111237 ||| | ||||| | |||| | || |||| |||| || | |||||| Sbjct 558443 TTCTTTTAGTTTCTTGAAATCGTACGT---CTTCTCGGGTGTGACGAACATGTTAAGGGC 558499 Query 111238 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 111297 ||| |||||||| ||||| || || ||||||| | | |||||||| |||||||| Sbjct 558500 GATGGATGCCAAGTTGCATACTGCAATCTCATCTGGCGCAGAGTACTCTACGATTTCTGT 558559 Query 111298 ACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGC 111357 || | |||| | ||| || || || | ||||| ||||| |||||| |||||| || Sbjct 558560 GCAAAGGTTGCTGCACTTGATAGTGCCAACATTCTGCTGGTTGCTCTTCCGGTTGCAGGC 558619 Query 111358 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||| || ||||||| || || | ||||| ||| ||| | | | ||| || ||| Sbjct 558620 ATCTTTAAAGAGCATATAAGGATTTCCCGTTTCCACCTGCGCCTCAATAATCGCGAACCA 558679 Query 111418 -AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGA 111476 || | | | || || | |||||| || ||||| ||||||||| ||| | Sbjct 558680 CAAGGACTGAGCCT-TAACTACTCGGTTGGCACGACCCTCTTGCTCGTACTTCAAGTACA 558738 Query 111477 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 111536 | |||||| || || ||| | ||| || || || || | ||||| | | Sbjct 558739 GCTTTTCAAATTCGTCGCCCCAAACATCGTGAAGGCCGGGGCATTTATGAGGACACATGA 558798 Query 111537 GAGACCATTGACCACCTT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 111594 | ||||| | || | || |||| || || |||||||| || || || ||||||| || Sbjct 558799 GGGACCAAT--CCTCGTTGGCCTCTACACGTTTCATGAAGAGATCGGGTATCCACAAGGC 558856 Query 111595 TGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACC-TTGGTTGAGTCGTAACTCAAGG 111652 | || | || | | || ||| |||||| | || || || | | | ||| ||| Sbjct 558857 GTAGAATAAGTCGCGTGCA-CGATTCTCTTCCTTTCCGGTGTTTTTCTTG-AGCTCGAGG 558914 Query 111653 AACTCCATGATATCCGCGTGCCATGGCTCAAG----ATAG--ACTGCGATAGATCCCTTT 111706 ||||| | || ||||| ||||||||||| || |||| | ||| || | ||| Sbjct 558915 AACTCGAAGACATCCGAATGCCATGGCTCCAGGTAAATAGCAAAGGCGCCAGGACGCTT- 558973 Query 111707 CGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 111766 | || || | |||| ||||| || || | |||||| || | ||||| |||| Sbjct 558974 -GCCG-CCTCCCTGATCCACATACCGTGCAACGTTGTTAAAGACCCTCAGCATGGGAACC 559031 Query 111767 ATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATG 111825 | ||||| || ||||| || || | ||| |||| | || || | | ||| Sbjct 559032 AGACCATTGGAGGTGCCATTGGTGCCGCAAAT-CGAGGTGCCCTTTGCCCGAATGCAATG 559090 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCAC-ACTCCGTAAGAGT 111882 | | || |||||||| || ||| | ||||| || | |||||| |||| | | | Sbjct 559091 CACATTCAGTCCAATACCACCTGCCGATTTTGAAATCATGGCGCACTGCTCC--ACGGAT 559148 Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942 | | | || || | ||| ||||| || | ||| | ||||| || |||| ||| Sbjct 559149 TTGA-AAATGCCCTCGATCGAGTCGGCCGTCATGGTCAAGAGGAAACACGAAGACAACTG 559207 Query 111943 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGA 112002 || | ||| |||| || || ||||| | || ||| | || | | | ||| Sbjct 559208 TGGGCGATTTGTGGCAGCGGCAAAAAGAGTTGGCGAGGCATGAGTAAAGAATCGCTCGGA 559267 Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGAC 112062 || | ||| || |||| ||| ||| || || || |||||||| || ||||| || Sbjct 559268 CAAAAGATTGTAGGTTTCCACAGCAGCATCGATATCCTCTCCGTGGATTCCAATTGCCAC 559327 Query 112063 CCGCATGAACATGTACTGTGGG 112084 ||||| ||||| | |||||| Sbjct 559328 GCGCATCAACATATGTTGTGGG 559349 >seq5545 Length=267088 Score = 98.7 bits (108), Expect = 1e-15 Identities = 187/273 (68%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 ||||| || ||| | | || ||||| || ||||||| ||||| || | ||||||||| Sbjct 143664 TCTTTGCCGCCCGTCAATCGAGTACCGAACTGACCACGCGGCTCCAGCAAATTAATGTTG 143605 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924 || | || ||| | | ||||| || || ||||| ||| || || || || || || Sbjct 143604 TTCGCGCCCACATAATTCTGGGCCAGATTCACAATGGTCATCTGC-AGCGAGACCTCGCC 143546 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984 ||| ||||| || ||| | || || || | | | || ||| |||||||||| || Sbjct 143545 GTGATGGTAGGCCGACATTTCGGCCACCGAACCGGACAGCTGGGCCACCTTCACCTCGCG 143486 Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 ||| |||| | | ||| || | ||||||| || | ||| ||||| | |||||| Sbjct 143485 CTTGTCGTTCCTCTTGAAACAGGTGAACATCACCTTGCGCTGACCCGGCTTTAAACCATC 143426 Query 182045 CGCCATATGGGCAATAGAGCGCTTGAGGTCTGC 182077 | | | | || ||| ||||||| | |||||| Sbjct 143425 CACGAGACTGGGAATGGAGCGCTCGTTGTCTGC 143393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627986828798400