Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5351 136 5e-27 seq5545 109 7e-19 seq2263 89.7 6e-13 >seq5351 Length=991022 Score = 136 bits (150), Expect = 5e-27 Identities = 288/422 (68%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATAT--TCTCCA 129785 || || |||||| ||||||||| ||||||||||| |||||| ||| || || |||||| Sbjct 257273 TATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCC-AGC-GAAATCATCTCCA 257330 Query 129786 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 | || | ||| |||||||| | ||| | || | || || | || || | || Sbjct 257331 TGAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACCAGCAAAC 257390 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | ||| |||| || |||| |||||| ||| | ||||| ||||| ||||| Sbjct 257391 GGTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATGCCGATAAGGTTCA 257450 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||| || || || || |||| ||| ||||||| |||| || || || | ||| | Sbjct 257451 CTGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCGCGAATGATTTCAA 257510 Query 129966 GAATGGTCTC---CGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAAC 130021 ||| ||| | || |||| ||| ||| || || ||| | ||| || || Sbjct 257511 TGATGCGCTCTCGCTTG---GGTC-GCTGCACAAGGTGCTGGAACATCAGCACTGCGAAA 257566 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || || ||||||||||| | ||||| || || || |||||| ||| || ||||| Sbjct 257567 TCGCAATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATC 257626 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || || |||||||||| ||||||||| | || ||| ||||||||| || ||| Sbjct 257627 AGGCCTCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCTTCC 257686 Query 130142 AC 130143 || Sbjct 257687 AC 257688 >seq5545 Length=267088 Score = 109 bits (120), Expect = 7e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123 ||||||||| ||| | | || || || || ||||||| ||||| || | ||| || || Sbjct 143665 ATCTTTGCCGCCCGTCAATCGAGTACCGAACTGACCACGCGGCTCCAGCAAATTAATGTT 143606 Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182 ||| | |||| || | | ||||| || ||||| || ||| || || ||||| || | Sbjct 143605 GTTCGCGCCCACATAATTCTGGGCCAGATTCACAATGGTCATCTGC-AGCGAGACCTCGC 143547 Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCAT 179242 |||||||||| |||||| | || ||||| | | | || ||| |||||||||| ||| Sbjct 143546 CGTGATGGTAGGCCGACATTTCGGCCACCGAACCGGACAGCTGGGCCACCTTCACCTCGC 143487 Query 179243 CCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTT 179279 |||| |||| | | ||| || | |||||||||| Sbjct 143486 GCTTGTCGTTCCTCTTGAAACAGGTGAACATCACCTT 143450 >seq2263 Length=7733 Score = 89.7 bits (98), Expect = 6e-13 Identities = 248/373 (66%), Gaps = 8/373 (2%) Strand=Plus/Minus Query 14059 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 14118 || ||| ||||| || || || || || || || ||| || | || ||||| || Sbjct 7479 CTGACGGTCAAAACGGCCGGGACGCAGCAGAGCCGGGTCCAGCACGTCCGGACGGTTGGT 7420 Query 14119 CGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTG 14178 || || || | | | |||| | | | ||||| || |||||||| || | || Sbjct 7419 GGCAGCAATCAGGATCACGCCCTCATTGCTTTCAAACCCGTCCATCTCGACCAGCATCTG 7360 Query 14179 ATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTA 14236 || | || || || || ||||||||| | || | | ||||||| || || Sbjct 7359 GTTCAGCGTCTGCTCACGCTCATCATTCCC--GCCGCCAAGGCCCGCACCACGATGGCGG 7302 Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGG-TTGATTTTCACGGGCAACTTC 14295 || |||||||||||||| || ||||| | ||| || || | ||| | | | || Sbjct 7301 CCCACGGCGTCAATTTCGTCAATGAAGATGATGCACGGCGCGGCCTTCTTGCCCTGC-TC 7243 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 14355 || || || ||||| | | ||||| ||||| |||||||| |||||||| | | | Sbjct 7242 GAACATGTCACGCACACGCGACGCACCAACACCGACAAACATTTCCACAAAGTCAGACCC 7183 Query 14356 GGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 14414 |||| || | || ||| || || || | |||||||| ||||| || || || ||||||| Sbjct 7182 GGAA-ATGGTGAAGAACGGCACATTGGCCTCACCCGCAATGGCACGCGCCAGCAGGGTCT 7124 Query 14415 TCCCCGTCCCTGG 14427 | ||||| || || Sbjct 7123 TACCCGTGCCCGG 7111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618390719048240