Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5380 181 1e-40 seq5351 109 6e-19 seq2263 109 6e-19 >seq5380 Length=870010 Score = 181 bits (200), Expect = 1e-40 Identities = 1048/1645 (64%), Gaps = 50/1645 (3%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 |||||| | ||||| ||||||||||| || || || || || || || || ||| ||| Sbjct 559349 CCCACAACATATGTTGATGCGCGTGGCAATTGGAATCCACGGAGAGGATATCGATGCTGC 559290 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 |||| || ||| | ||||| | | | || | ||| || | ||||| || || Sbjct 559289 TGTGGAAACCTACAATCTTTTGTCCGAGCGATTCTTTACTCATGCCTCGCCAACTCTTTT 559230 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 |||| ||| | || || |||| || ||||| | ||| | || || Sbjct 559229 TGCCGCTGCCACAAATCGCCCACAGTTGTCTTCGTGTTTCCTCTTGACCATGACGGCCGA 559170 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGT-GTGCGCAA--ATCTCAAAGTGGGC 104457 ||| ||| | || || | | || | | |||| |||||| | || ||||| | ||| Sbjct 559169 CTCGATCGAGGGCATTT-TCAAATCCGT--GGAGCAGTGCGCCATGATTTCAAAATCGGC 559113 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGA 104516 || |||||||| || | | ||| | | || || | |||| ||| | || | Sbjct 559112 AGGTGGTATTGGACTGAATGTGCATTGCATTCGGGCAAAGGGCACCTCG-ATTTGCGGCA 559054 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | ||||| || ||||| | |||| ||||| | || |||||| | || || | Sbjct 559053 CCAATGGCACCTCCAATGGTCTGGTTCCCATGCTGAGGGTCTTTAACAACGTTGCACGGT 558994 Query 104577 ATGTAAATCAAGCTGGGCGTCGAAAGGGATCTATCGCAGT--CTAT----CTTGAGCCAT 104630 |||| |||| | || || | ||| | || ||| | |||| || ||||||| Sbjct 558993 ATGTGGATCAGGGAGG-CGGC--AAGCGTCCTGGCGCCTTTGCTATTTACCTGGAGCCAT 558937 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 |||| ||||| || | |||||||| ||| | ||| || | || ||| | Sbjct 558936 GGCATTCGGATGTCTTCGAGTTCCTCGAGCTCAAGAAAAACACCGGAAAGGAAGAGAATC 558877 Query 104691 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 | ||| ||||| | |||| ||| | ||||| || |||||||||||||| | || ||| Sbjct 558876 G-TGCACGCGACTTATTCTACGCCTTGTGGATACCCGATCTCTTCATGAAACGTGTAGAG 558818 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 | | | ||||||| ||| | ||||| | || || || || ||||| | Sbjct 558817 GCCAACGAGGATTGGTCCCTCATGTGTCCTCATAAATGCCCCGGCCTTCACGATGTTTGG 558758 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGA-CTGCGAC 104868 || || || |||||| || ||| ||||||||| |||| ||||| || | | | | Sbjct 558757 GGCGACGAATTTGAAAAGCTGTACTTGAAGTACGAGCAAGAGGGTCGTGCCAACCGAGTA 558698 Query 104869 GGT---GC-CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 104924 | | || ||| || ||||| || ||| | || | || || || || | Sbjct 558697 GTTAAGGCTCAGT--CCT---TGTGGTTCGCGATTATTGAGGCGCAGGTGGAAACGGGAA 558643 Query 104925 CACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 104984 || || ||||| | ||||| ||||| |||| ||||| || || ||||| | || Sbjct 558642 ATCCTTATATGCTCTTTAAAGATGCCTGCAACCGGAAGAGCAACCAGCAGAATGTTGGCA 558583 Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 |||||| | ||| || || ||||||||| | || | | | |||||||| | Sbjct 558582 CTATCAAGTGCAGCAACCTTTGCACAGAAATCGTAGAGTACTCTGCGCCAGATGAGATTG 558523 Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACAT 105104 | || || ||| | ||||| ||||| || || || || || |||| |||| | Sbjct 558522 CAGTATGCAACTTGGCATCCATCGCCCTTAACATGTTCGTCACACCCGAGA---AGACGT 558466 Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164 |||| | ||||| | |||||||| || || ||||||||||| || |||| | | Sbjct 558465 ACGATTTCAAGAAACTAAAAGAAGTTACCAAGACGGTCACCAAAAATCTTAACAAGATAA 558406 Query 105165 TTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224 | |||| ||| | ||| ||| | | || ||||| ||| ||||||| || || Sbjct 558405 TCGATATAAACTATTATCCCCTGCCGGAGGCAAAGAAATCCAATTTGAGACATCGCCCCG 558346 Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATT 105284 | || |||| ||||||||| |||| || | || ||||| || | | | ||| Sbjct 558345 TGGGCATCGGAGTTCAGGGTTTCGCTGACGCCTTGATTCTCATGCGATTCCCCTATGAAA 558286 Query 105285 CCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTG 105344 || ||||| | ||| || |||||||| || || || ||| |||| | | Sbjct 558285 GTGAAGAAGCTGGTCTTTTGAATCAGCAGATATTTGAAACTATTTACTACGGCGCTTTGG 558226 Query 105345 AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404 |||| |||| ||| |||| ||| ||||||||||||| ||||||| ||| || || | Sbjct 558225 AGGCCAGTTGTGAGCTGGCTGAGATTGATGGTCCATACGAAACCTATGAAGGGAGCCCCG 558166 Query 105405 CTTCACAAGGG-GTGCTTCAATTTGATATGTGGG----AAGGTGAGACCAAGCTTCACTA 105459 | ||||| | || || | || ||||||| || | | || || || | Sbjct 558165 -TAAGTAAGGGTATTCTGCAGTACGACATGTGGGACAAAACGCCA-ACGAACCT---GTG 558111 Query 105460 CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCAT 105519 |||||| | || ||||| |||||| || | ||| | | ||| || || | Sbjct 558110 GGACTGGCAGAAACTGAAGGAGTCGATCAAGAAGCACGGTGTCAGGAACTCCCTGCTTGT 558051 Query 105520 GGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579 |||||| ||||| || || || || || || || |||| || || |||| || || || Sbjct 558050 GGCTCCTATGCCCACTGCATCTACTGCCCAGATTATGGGCAACAACGAATCTTTCGAGCC 557991 Query 105580 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAA 105639 || ||||| || || || ||| || || | || || ||| | |||||| | Sbjct 557990 GTATACGACTAATATTTACACTAGACGAGTTCTGTCCGGCGAATTTCAAGTGGTCAACCA 557931 Query 105640 GCATCTCGTGGA-TGACCTCAAAGAGATTGGTC-TCTGGTCCAAGGATATGAAGGATCTC 105697 || || || || ||||| | || ||||| | | ||| | | ||||||||| | | Sbjct 557930 TCA-CTTGTTGAGGGACCTGACTGA-ATTGGACTTGTGGGACGATGATATGAAGAACCAA 557873 Query 105698 AT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA- 105755 || | ||| || || ||||||||||| || | | || || | ||| | || Sbjct 557872 ATAATTTCCAGCAGG-GGCTCCATTCAAAACATCGAAGCCATCCCGCA-GAAGGTCCGAG 557815 Query 105756 AGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATC 105815 | | ||| || || ||||||||| ||||| | ||| | |||||||| |||| Sbjct 557814 ATCTTTACAAAACCGTGTGGGAAATCTCTGTGAAGTCTACTATTAAAATGGCCGCTGATC 557755 Query 105816 GTGGTCGCTTCATTGATCAAAGTCA 105840 | ||| ||||| |||||||| || Sbjct 557754 GAGGTGCTTTCATCGATCAAAGCCA 557730 >seq5351 Length=991022 Score = 109 bits (120), Expect = 6e-19 Identities = 296/444 (67%), Gaps = 8/444 (2%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || |||| ||||| || || || ||||||||| || |||| | | Sbjct 257712 GAGCGCATCATCGCCTTTGCCGCCGTGGAAGGCATCTTCTTCAGCGGCAGCTTCGCCTCC 257653 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 |||| ||||| ||||||||||| || ||||| || || ||||||||||||||| ||| Sbjct 257652 ATTTTCTGGCTGAAGAAGCGAGGCCTGATGCCGGGACTGACCTTCTCCAACGAGCTGATC 257593 Query 94924 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG-GAACTTTTCAAATTATTGCGTAT 94982 || | |||||||| || || || || || ||| | || || ||| | | Sbjct 257592 TCAAGGGACGAGGGTCTGCATTGCGATTTCGCAGTGCTGATGTTCCAGCACCTTGTGCAG 257533 Query 94983 TAAACCAA-CGACTGAGACTATTCATT-CTATTGTTAAGGAAGCCGTTGAGATTGAGAAA 95040 | |||| ||| ||| | ||||| || || || || || | |||||| | Sbjct 257532 CGACCCAAGCGA--GAG-CGCATCATTGAAATCATTCGCGATGCGGTGGCCATTGAGCAG 257476 Query 95041 GGATTCATATTGGATGCCCTTCCA-TGCGCTCTCATCGGTATGAATTCTGAAAAAATGTC 95099 | ||| | |||||||| ||| || | || ||||| ||||||| || ||||| Sbjct 257475 GAGTTCCTCACCGATGCCCTGCCAGTGAAC-CTTATCGGCATGAATTGCGATCTGATGTC 257417 Query 95100 TGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAATTTG 95159 | ||||| |||| || | || | ||| || | || | || || || | Sbjct 257416 GCAGTATATCGAGTTCGTGGCCGACCGTTTGCTGGTGGAGTTGGGCGTTGGAAAGATCTA 257357 Query 95160 GAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTT 95219 ||| ||||||| || ||| |||||||||||| ||| || ||||| ||||||||||| Sbjct 257356 CAACACCAAGAACCCCTTTAACTTCATGGAGATGATTTCGCTGGACGGCAAGACAAACTT 257297 Query 95220 CTTCGAAAAGAGGGTTGGGGACTA 95243 ||||| |||| |||||| || || Sbjct 257296 TTTCGAGAAGAAGGTTGGCGAATA 257273 >seq2263 Length=7733 Score = 109 bits (120), Expect = 6e-19 Identities = 274/408 (67%), Gaps = 14/408 (3%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 ||||| || |||||||| || | ||||| | || || || || ||||||||| | Sbjct 7388 TCAAACCCGTCCATCTCGACCAGCATCTGGTTCAGCGTCTGCTCACGCTCATCATTCCC- 7330 Query 9671 GGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728 || | | || |||| || || |||||||| ||||| || |||||||||| || Sbjct 7329 -GCCGCCAAGGCCCGCACCACGATGGCGGCCCACGGCGTCAATTTCGTCAATGAAGATGA 7271 Query 9729 TGCATGGTT-GATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 |||| || | ||| | | || | || | || || |||||| || || ||| Sbjct 7270 TGCACGGCGCGGCCTTCTTGCCCTGCT-CGAACATGTCACGCACACGCGACGCACCAACA 7212 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9846 || |||||||| |||||||||| | ||||| || | || ||| || ||||| | || Sbjct 7211 CCGACAAACATTTCCACAAAGTCAGACCCGGAA-ATGGTGAAGAACGGCACATTGGCCTC 7153 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 |||||||||||| || || || || ||||||||||| || || || | || ||| | Sbjct 7152 ACCCGCAATGGCACGCGCCAGCAGGGTCTTACCCGTGCCCGGAGGCCCGACCAGCAGGAC 7093 Query 9907 ACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATC 9963 || || || ||| |||| || || || ||| || | || || || || Sbjct 7092 GCCCTTGGGGATTTTGCCGCCCAGACGGGTAA---ATTTCTGCGGGTCTTTCAGGAAGTC 7036 Query 9964 CACAATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 |||||||| | | ||| | ||||| | ||||| ||| ||||||| Sbjct 7035 GACAATTTCCTGAAGCTCACCCTTGGCTTCATCAATACCCGCAACATC 6988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583218848966960