Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5380 165 9e-36 seq5351 132 5e-26 seq1747 93.3 5e-14 >seq5380 Length=870010 Score = 165 bits (182), Expect = 9e-36 Identities = 493/757 (65%), Gaps = 4/757 (1%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 ||||||| |||||| || || |||| || || ||| ||| | |||||||||||| Sbjct 558504 GATGCCAAGTTGCATACTGCAATCTCATCTGGCGCAGAGTACTCTACGATTTCTGTGCAA 558563 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 | || ||||||| ||||| | |||| ||||||||||||| ||| ||||| || Sbjct 558564 AGGTTGCTGCACTTGATAGTGCCAACATTCTGCTGGTTGCTCTTCCGGTTGCAGGCATCT 558623 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 || || ||| || || | || || || ||||| || | || || ||| | | Sbjct 558624 TTAAAGAGCATATAAGGATTTCCCGTTTCCACCTGCGCCTCAATAATCGCGAACCACAAG 558683 Query 79237 TCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTCG 79296 | | ||| || || ||| ||||||| | ||||| || ||||| || Sbjct 558684 GACTGAGCCTTAACTACTCGGTTGGCACGACCCTCTTGCTCGTACTTCAAGTACAGCTTT 558743 Query 79297 TTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGC 79356 | || | || || | |||||| | ||||| ||||| | || || ||||| ||| | Sbjct 558744 TCAAATTCGTCGCCCCAAACATCGTGAAGGCCGGGGCATTTATGAGGACACATGAGGGAC 558803 Query 79357 CAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAG 79416 || ||||||| ||| || | ||||||||| || || ||||||| ||| ||| Sbjct 558804 CAATCCTCGTTGGCCTCTACACGTTTCATGAAGAGATCGGGTATCCACAAGGCGTAGAAT 558863 Query 79417 AGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATG 79476 | |||||| ||| |||| || | || ||| |||||||| || || | | Sbjct 558864 AAGTCGCGTGCACGATTCTCTTCCTTTCCGGTGTTTTTCTTGAGCTCGAGGAACTCGAAG 558923 Query 79477 ATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCC 79536 | || | ||||| |||||||| || || || || | || ||||||||||| ||| Sbjct 558924 ACATCCGAATGCCATGGCTCCAGGTAAATAGCAAAGGCGCCAGGACGCTTGCCGCCTCCC 558983 Query 79537 TGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCG 79596 || | || ||||| || |||||| || || | |||||||| || | || | || | Sbjct 558984 TGATCCACATACCGTGCAACGTTGTTAAAGACCCTCAGCATGGGAACCAGACCATTGGAG 559043 Query 79597 ACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA-GCA-GTGGATTC 79654 ||| || || ||| || || || | ||||||||| | | ||| | | || Sbjct 559044 GTGCCATTGGTGCCGCAAATCGAGGTGCCCTTTGCCCGAATG--CAATGCACATTCAGTC 559101 Query 79655 CGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCT 79714 | || || || | | | || || || ||||||| || | | | | | ||||||| Sbjct 559102 CAATACCACCTGCCGATTTTGAAATCATGGCGCACTGCTCCACGGATTTGAAAATGCCCT 559161 Query 79715 CGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTAC 79774 ||||||||||| || |||| | | ||||| || |||| ||||||| || || Sbjct 559162 CGATCGAGTCGGCCGTCATGGTCAAGAGGAAACACGAAGACAACTGTGGGCGATTTGTGG 559221 Query 79775 CGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAA 79811 | ||| || || || |||| || || || ||||| Sbjct 559222 CAGCGGCAAAAAGAGTTGGCGAGGCATGAGTAAAGAA 559258 Score = 102 bits (112), Expect = 9e-17 Identities = 193/284 (68%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 19415 GGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGC 19474 ||| | || || ||||| | ||||| |||||| || |||| || | ||||| ||| Sbjct 559036 GGTCTGGTTCCCATGCTGAGGGTCTTTAACAACGTTGCACGGTATGTGGATCAGGGAGGC 558977 Query 19475 GGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGAT 19534 ||||| || ||| | || || || ||||| ||||||||||| |||| ||| | || Sbjct 558976 GGCAAGCGTCCTGGCGCCTTTGCTATTTACCTGGAGCCATGGCATTCGGATGTCTTCGAG 558917 Query 19535 TTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACG 19594 |||||||| || ||| || | || |||| || |||||| | ||| Sbjct 558916 TTCCTCGAGCTCAAGAAAAACACCGGAAAGGAAGAGAATCGTGCACGCGACTTATTCTAC 558857 Query 19595 GCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTG 19654 ||||||||||| || || || |||||| | || ||| |||| || ||| ||| Sbjct 558856 GCCTTGTGGATACCCGATCTCTTCATGAAACGTGTAGAGGCCAACGAGGATTGGTCCCTC 558797 Query 19655 ATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 ||||| || || ||||||| ||||| | ||| || | ||||| Sbjct 558796 ATGTGTCCTCATAAATGCCCCGGCCTTCACGATGTTTGGGGCGA 558753 Score = 98.7 bits (108), Expect = 1e-15 Identities = 311/470 (66%), Gaps = 19/470 (4%) Strand=Plus/Minus Query 20356 GATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGAC 20415 |||||||| ||||| | | ||||| |||| || || || ||||| || || || || Sbjct 558086 GATCAAGAAGCACGGTGTCAGGAACTCCCTGCTTGTGGCTCCTATGCCCACTGCATCTAC 558027 Query 20416 CGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCG 20475 |||||||| ||||| |||||||| ||||||||||||| ||||| || || ||| | Sbjct 558026 TGCCCAGATTATGGGCAACAACGAATCTTTCGAGCCGTATACGACTAATATTTACACTAG 557967 Query 20476 TCGTACACTGGCCGGTGAGTTCGTCA--TGGTAAACAAGCACCTGGTCCGCGACTTG-CA 20532 || ||| |||| || || ||| |||| ||| | ||| || | | ||| || | Sbjct 557966 ACGAGTTCTGTCCGGCGAATT--TCAAGTGGTCAACCATCACTTGTTGAGGGACCTGACT 557909 Query 20533 GAAGATCGATATGTGGTCGCCCA--AAATTAAGAATGAAAT--TGTCCGAGCCGGCGGGA 20588 ||| | || ||||| | | | | || ||||| |||| | ||| ||| || | Sbjct 557908 GAA-TTGGACTTGTGG--GACGATGATATGAAGAACCAAATAATTTCC-AGCAGGGGCTC 557853 Query 20589 GCGTCCAGGCATTG--GATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGA 20646 || | ||| | | ||||| ||||| || || |||||| ||||| ||||| Sbjct 557852 CATTCAAAACATCGAAGCCATCCCGCAGAAGGTCCGAGATCTTTACAAAACCGTGTGGGA 557793 Query 20647 AATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTC 20706 |||| | |||| | || | ||||| || ||||| || || | |||||| || Sbjct 557792 AATCTCTGTGAAGTCTACTATTAAAATGGCCGCTGATCGAGGTGCTTTCATCGATCAAAG 557733 Query 20707 CCAGTCGCTCAATGTCTTCA--TGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCAT 20764 |||||| |||| |||| ||| | || | | | ||||| | ||||| || Sbjct 557732 CCAGTCCTTCAA--CATTCATGTGGCAGAGCCAAACTACGGAAAGCTTACGTCCATACAC 557675 Query 20765 ATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGAC 20814 | ||| |||| | ||||| || || || |||||||||||||| || Sbjct 557674 TTTTACTCCTGGAAAGCTGGGCTTAAAACCGGAATGTACTATCTGCGCAC 557625 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||| || || ||||| ||||||||||||| |||||||| ||||| |||||||| || || Sbjct 557972 GTAAATATTAGTCGTATACGGCTCGAAAGATTCGTTGTTGCCCATAATCTGGGCAGTAGA 558031 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATC 78648 || || ||||| || || || || || || |||| | ||| ||| |||||||| Sbjct 558032 TGCAGTGGGCATAGGAGCCACAAGCAGGGAGTTCCTGACACCGTGCTTCTTGATC 558086 >seq5351 Length=991022 Score = 132 bits (146), Expect = 5e-26 Identities = 348/526 (66%), Gaps = 5/526 (1%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| |||| |||||| | ||||| || ||||||| || ||| || | Sbjct 258081 TCTTTCTGGACCGTGGAGGAGGTGGACCTGTCCAAGGACCTGACCGACTGGCACCGCTTG 258022 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 || ||||||||| || || || | || ||||||||||||| || ||||| Sbjct 258021 AAGGACGACGAGCGCCACTTTATTTCGCACGTGTTGGCCTTCTTCGCAGCCTCCGATGGC 257962 Query 59733 ATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGG 59792 ||||| | || ||| | | | ||| | |||| || ||||| | |||||||| Sbjct 257961 ATTGTCAATGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGATCACAGAGGCCCGC 257902 Query 59793 TCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCAT 59851 | ||||||| | ||| ||| || ||| | ||||| |||| |||| | | Sbjct 257901 TGCTTCTACGGCTTCCAGATCGC-CATGGAGAACGTGCACTCGGAGATGTACAGTGTGCT 257843 Query 59852 GATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC 59911 |||||| | | || |||||| | || | |||||| ||||| || || Sbjct 257842 GATCGACACATACATCCGCGATCCGCACCAGCGAGAGTACCTGTTCAACGCCATCGAAAC 257783 Query 59912 GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAG-TCCTGG--AGC 59968 | || || || || | || || || ||||||||| ||||| ||| | ||| Sbjct 257782 GATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCCATGTCCTGGATCTCCTCCAAGTCAGC 257723 Query 59969 ATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTC 60028 || | | || |||| || ||||| ||||||||| ||||||||| ||| Sbjct 257722 CAACTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAAGGCATCTTCTTCAGCGGCAG 257663 Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088 ||| | ||||||||||| || ||||| ||||| |||||||| |||| |||||||| Sbjct 257662 CTTCGCCTCCATTTTCTGGCTGAAGAAGCGAGGCCTGATGCCGGGACTGACCTTCTCCAA 257603 Query 60089 CGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG 60134 ||||||||| || |||||||||| || ||| || || |||||| Sbjct 257602 CGAGCTGATCTCAAGGGACGAGGGTCTGCATTGCGATTTCGCAGTG 257557 >seq1747 Length=3787 Score = 93.3 bits (102), Expect = 5e-14 Identities = 174/250 (70%), Gaps = 12/250 (5%) Strand=Plus/Plus Query 53830 GACTCGATGGGGAACGATGCGGCGATCGTCCAGGCCGCCCGCGTTTCTTACGGGGCCGGA 53889 |||| |||||| | ||| | || || || ||||| ||||||||||| ||||| ||| Sbjct 2484 GACTATATGGGGGATGATTCCGCCATTGTGCAGGCGGCCCGCGTTTCCTACGGACGCGGC 2543 Query 53890 AC---CAAGTCGGTCAGCGACGAT--CGGGCTCTGATCCGCTATCTCATGCGCCACAAGC 53944 || |||| ||| || ||| |||||| ||||||||| || ||||| || | Sbjct 2544 ACGCGCAAG---GTCTCGGAAGATGCCGGGCT--GATCCGCTACCTGATGCGGCATCGTC 2598 Query 53945 ACACGACGCCGTTTGAGATGGTCGAATTCAAGTTTCACGTGCGCGCGCCCATCTACGTGG 54004 | | |||||||||| ||| ||| | || |||||||| ||| |||| || | Sbjct 2599 ATTCCTCGCCGTTTGAAATGTGCGAGATGAAATTTCACGTCAAACTGCCGATCTTTGTAG 2658 Query 54005 CGCGTCAGTGGCTCCGTCACCGGACTGCGTCCGTCAACGAGATGAGC-GCTCGTTACTCC 54063 |||| |||||| |||| ||||| | || ||| ||||| || | || ||||| ||| Sbjct 2659 CGCGGCAGTGGATCCGCCACCGTATGGCCAGCGTGAACGA-ATATTCTGCCCGTTATTCC 2717 Query 54064 ATCGTCGACA 54073 || |||||| Sbjct 2718 ATTCTCGACA 2727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548485347353760