Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5380 140 4e-28 seq5545 132 5e-26 seq5351 125 8e-24 >seq5380 Length=870010 Score = 140 bits (154), Expect = 4e-28 Identities = 460/699 (66%), Gaps = 16/699 (2%) Strand=Plus/Minus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331 |||||| || ||| ||||||| || || ||||| || |||| ||| ||| |||| Sbjct 559256 CTTTACTCATGCCTCGCCAACTCTTTTTGCCGCTGCCACAAATCGCCCACAGTTGTCTTC 559197 Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391 || ||||| || | |||| || ||||||||||| ||||| | | | | | || | Sbjct 559196 GTGTTTCCTCTTGACCATGACGGCCGACTCGATCGAGGGCATTTTCAAATCCGTGGAGCA 559137 Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA-CTGC-TCGAACGTCCGT 53449 ||| ||| || || || | | | |||||||| || | | ||| | | | | || Sbjct 559136 GTGCGCCATGATTTCAAAATCGGCAGGTGGTATTGGACTGAATGTGCATTG--CATTCGG 559079 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 || || ||||| | || || || || ||| | || |||| | || || ||||| Sbjct 559078 GCAAAGGGCACCTCGATTTGCGGCACCAATGGCACCTCCAATGGTCTGGTTCCCATGCTG 559019 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569 | ||||| |||||| || ||||| || | ||||| || || ||||| || | Sbjct 559018 AGGGTCTTTAACAACGTTGCACGGTATGTGGATCAGGGAGGCGGCAAGCGTCCTGGCGCC 558959 Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 || || || ||||| ||||| ||||| | || | | ||||| |||||||| | Sbjct 558958 TTTGCTATTTACCTGGAGCCATGGCATTCGGATGTCTTCGAGTTCCTCGAGCT-CAAGAA 558900 Query 53630 AATCA-GGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TACAGCTCTGTGGATTCCG 53686 || || || | ||||||| || ||| || ||| | || ||| || ||||||| || Sbjct 558899 AAACACCGGAAAGGAAGAGAATCG-TGCACGCGACTTATTCTAC-GCCTTGTGGATACCC 558842 Query 53687 GACCTCTTCATGCAAAAGGTGGAGAAG--GACGAGGAGTGGTACCTGATGTGCCCGAACG 53744 || ||||||||| ||| ||| ||| | ||||||| |||| ||| ||||| || | Sbjct 558841 GATCTCTTCATG--AAACGTGTAGAGGCCAACGAGGATTGGTCCCTCATGTGTCCTCATA 558784 Query 53745 AGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACG 53804 | ||||||||||| || | ||| | || || || ||| | || |||| || ||||| Sbjct 558783 AATGCCCCGGCCTTCACGATGTTTGGGGCGACGAATTTGAAAAGCTGTACTTGAAGTACG 558724 Query 53805 CAGTTCAGGGCCGCTACAA-GAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTC 53863 |||| || ||| || | || ||||| | | ||| || || | Sbjct 558723 AGCAAGAGGGTCGTGCCAACCGAGTA-GTTAAGGCTCAGTCCTTGTGGTTCGCGATTATT 558665 Query 53864 AAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAG 53923 || |||||||| ||||||| || || ||| || || ||| | |||| |||| Sbjct 558664 GAGGCGCAGGTGGAAACGGGAAATCCTTATATGCTCTTTAAAGATGCCTGCAACCGGAAG 558605 Query 53924 AGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 ||||||||| |||| | ||| ||||| | |||||| Sbjct 558604 AGCAACCAGCAGAATGTTGGCACTATCAAGTGCAGCAAC 558566 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 55487 AACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAAC 55546 ||||||||||| ||||| || ||||| || || || || || ||||| |||||||||||| Sbjct 558064 AACTCCCTGCTTGTGGCTCCTATGCCCACTGCATCTACTGCCCAGATTATGGGCAACAAC 558005 Query 55547 GAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 || | ||||||||||| ||||| || || ||| Sbjct 558004 GAATCTTTCGAGCCGTATACGACTAATATTTAC 557972 >seq5545 Length=267088 Score = 132 bits (146), Expect = 5e-26 Identities = 302/451 (67%), Gaps = 4/451 (1%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || ||||| || || || |||||||| | ||| || | ||| || || || Sbjct 143844 CCTGTTCCAATGCCATCGGCTCCATTGACCAGCACCATTGGGATAATGGGCAGATACCAC 143785 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 |||||| | || ||| || || |||| | ||| | | | | || ||| || Sbjct 143784 AGCGGCTCGATCTTTTGGCCATCGTCCACCTGGTAGTCGAGCAGCGGATCGTCGAGAGGG 143725 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | || || |||| || | || || | ||||| ||||| || | ||||| | Sbjct 143724 TGAAAGATGAGTCGCGTTAGGGGCGACATCAGGGTGAAAATGTAACGAGCACTGGCGCAA 143665 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 || ||||| || | || || || || ||||| ||| ||||| || | || | |||| Sbjct 143664 TCTTTGCCGCCCGTCAATCGAGTACCGAACTGACCACGCGGCTCCAGCAAATTAATGTTG 143605 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 || |||||||| ||||||| |||| ||||||||| || |||||| | || ||| Sbjct 143604 TTCGCGCCCACATAATTCTGGGCCAGATTCACAATGGTCATCTGCAGCGAGACCTCGCCG 143545 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-CG- 152233 || || || |||| | || || | | || | || ||| |||||||||| || || Sbjct 143544 TGATGGTAGGCCGACATTTCGGCCACCGAACCGGACAGCTGGGCCACCTTCACCTCGCGC 143485 Query 152234 TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGT 152293 | ||| |||| |||||| ||||| | | |||||||||||||| || || ||||| | Sbjct 143484 TTGTC--GTTCCTCTTGAAACAGGTGAACATCACCTTGCGCTGACCCGGCTTTAAACCAT 143427 Query 152294 CCACCACGTGAGGAATCGAACGCTTGATGTC 152324 |||| | ||||| || |||| | |||| Sbjct 143426 CCACGAGACTGGGAATGGAGCGCTCGTTGTC 143396 Score = 131 bits (144), Expect = 2e-25 Identities = 189/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| || || ||| ||||| || | | || |||||||| || Sbjct 143691 GTGAAAATGTAACGAGCACTGGCGCAATCTTTGCCGCCCGTCAATCGAGTACCGAACTGA 143632 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 |||| |||||||| | || | |||||| ||||||||| | || || |||| || ||| Sbjct 143631 CCACGCGGCTCCAGCAAATTAATGTTGTTCGCGCCCACATAATTCTGGGCCAGATTCACA 143572 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || || |||| || || || || |||| | || ||||| | || Sbjct 143571 ATGGTCATCTGCAGCGAGACCTCGCCGTGATGGTAGGCCGACATTTCGGCCACCGAACCG 143512 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 | |||||| |||||||||| || | | |||| |||||| |||| | |||||| Sbjct 143511 GACAGCTGGGCCACCTTCACCTCGCGCTTGTCGTTCCTCTTGAAACAGGTGAACATCACC 143452 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCC 117571 |||||||||| ||||| | ||||||| Sbjct 143451 TTGCGCTGACCCGGCTTTAAACCATCC 143425 >seq5351 Length=991022 Score = 125 bits (138), Expect = 8e-24 Identities = 530/821 (65%), Gaps = 31/821 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || ||| ||| || |||||||| ||||| || |||| ||| || ||||||| Sbjct 257273 TATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGCGAAATCATCTCCATG 257332 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC----CCAAACTGTGCCATGAG 74578 ||| || |||||||| | ||| || ||| ||| || |||| ||| | Sbjct 257333 AAGTTAAAGGGGTTCTTGGTGTTGTAGAT---CTT-TCCAACGCCCAACTCCACCAGCAA 257388 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638 || || ||||| || | || ||||||| ||| | || ||||||||| || || Sbjct 257389 ACGGTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATGCCGATAAGGTT 257448 Query 74639 GCAC-GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCT 74697 ||| ||||| || ||||||| ||||| ||| | | || | | ||| | ||| Sbjct 257449 -CACTGGCAGGGCATCGGTGAGGAACTCCTGCTCAA--TGGCCACCGCATCGCG-AATGA 257504 Query 74698 TGTGAATGT----CTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCA 74753 | | |||| || | | || | | | | ||||| | | | | ||| || Sbjct 257505 TTTCAATGATGCGCTCTCGCTTGGGTCGCTGCACA-AGGTGCTGGAACATCAGCACTGCG 257563 Query 74754 AACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGC 74813 || || |||| || || || || |||| || || || || | || || ||| Sbjct 257564 AAATCGCAATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGC 257623 Query 74814 ATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCT 74873 || || || |||||||||| ||| || |||| |||| || ||||||||||||||| Sbjct 257624 ATCAGGCCTCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCT 257683 Query 74874 TCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAAGTCATCCAA 74930 || || |||||||||| | ||| | | |||| | || | ||| | ||||| Sbjct 257684 TCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAGTTGGCTGACTTGGAGGAGATCCAG 257743 Query 74931 GTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGG 74990 | | ||||| ||||| || || || ||||| || | || ||||| || | ||| ||| Sbjct 257744 GACATGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTTTCGATGGCGTTGAACAGG 257803 Query 74991 CTTGCCTTCTCT--TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCG 75048 | | || || | ||||| || | |||| |||| | |||| |||||| Sbjct 257804 --TACTCTCGCTGGTGCGGATCGCGGATGTATGTGTCGATCAGCACACTGTACATCTCCG 257861 Query 75049 AATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGT 75107 | || | ||| || ||| |||| | ||||||| | || ||||||| ||||| Sbjct 257862 AGTGCACGTTCTCCATG-GCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTGTGATCTGC 257920 Query 75108 ACATCCT--TTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGA 75165 || |||| |||| || | | |||||| |||| ||||| || ||||| |||| Sbjct 257921 ACCTCCTGGCTGAAGCGCTC--CACCAGATTCTCATTGACAATGCCATCGGAGGCTGCGA 257978 Query 75166 AAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCT 75225 | || |||| || |||||||||||||| ||||| | | || ||| || Sbjct 257979 AGAAGGCCAACACGTGCGAAATAAAGTGGCGCTCGTCGTCCTTCAAGCGGTGCCAGTCGG 258038 Query 75226 TCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 |||||||| | || || | |||||| || ||||||||| Sbjct 258039 TCAGGTCCTTGGACAGGTCCACCTCCTCCACGGTCCAGAAA 258079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547176641489200