Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5466 215 4e-51 >seq5466 Length=1802269 Score = 215 bits (238), Expect = 4e-51 Identities = 431/632 (68%), Gaps = 14/632 (2%) Strand=Plus/Plus Query 29838 TGGGAAAGGGTC-TGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGG 29896 |||||||||| | ||| | | || ||||| |||||| |||||||||| | ||| Sbjct 949185 TGGGAAAGGGACGTGGAGTGCGCGTC-AGCTGCTCCTTCAGTGGTTCCACGTGGTTCAGA 949243 Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29956 |||||||| ||||| |||||| |||| || || || ||||| | || || || || || Sbjct 949244 TAGACGTGCGCGTCACCCAGGGTGTGCACGAAGTCGCCCGGCTTGAGACCCGTTACATGG 949303 Query 29957 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 30016 || |||||||| ||||| || | |||| ||||| ||||||||||| || || |||||| Sbjct 949304 GCAATCATGTAGGTGAGCAGGGCGTAGGACGCGATATTAAAGGGTACGCCCAGGCCCATG 949363 Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG------TCGCTCACGTAAAAC 30070 || | ||||||||| ||||| || || || || ||| | | ||||| ||| Sbjct 949364 TCGGCACTCCTCTGGTACAGCTGGCAGGAAAGTTCACCGCGCGTTTGGGAAACGTAGAAC 949423 Query 30071 TGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCG 30130 || || | |||||||||||||||||||| | ||| || ||||| || Sbjct 949424 TGCGCCAGGCAATGGCACGGAGGAAGAGCCATTTTCGGTATGTCCAACGGATTCCACGCC 949483 Query 30131 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGC 30190 ||| ||||||||||||||| ||||||||| | ||| ||| | | | ||| | Sbjct 949484 GACATGATGATGCGCCTGTCCGACGGGTTGTTCTTAATGGTGTCGATCACATGGCGCAAC 949543 Query 30191 TGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATG 30249 || || || ||| | || | |||||| | | || || | |||||| || || || || Sbjct 949544 TGGTCGACGCCCTTGCCTGTGTAGTCGTCGTCGCAGGTTC-CGTACTCCGCCCCAAAGTG 949602 Query 30250 CCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCT 30309 | ||||||||| || |||||||||||||| || ||| | | | | | | ||| Sbjct 949603 GCGCCACTGGAAGCCATACACCGGTCCCAGATCACCCACGGCGCGCTCCGTGTGTCCCAG 949662 Query 30310 CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAG 30369 |||||| | || ||||| | | ||| | |||||||| | || |||| | || Sbjct 949663 CTTGTCTAGGAACTCTCTAGTGCAGTTCTCATCCCAGATGTGAACGTTCTTCGCCTGCAG 949722 Query 30370 CTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCA 30429 |||| || || || |||||||| ||||||||||| | || || | | Sbjct 949723 TAGCTTGGCGTCCGTCTTGCCCGCCACGAACCAGAGCAGCTCCTCGGCCAC--CCCGCGA 949780 Query 30430 A--AAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 | ||||| | ||||||||| || | ||||| Sbjct 949781 AAGAAGACGCGCTTGGTCGTCAGCAAAGGAAA 949812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406281906721368