Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5614 116 2e-21 seq4595 111 1e-19 >seq5614 Length=3457230 Score = 116 bits (128), Expect = 2e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||||| | ||| ||||||||| ||||| || || || || || || Sbjct 1200690 AGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGT 1200631 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || ||||| || || ||||| ||||| || || | |||||| Sbjct 1200630 CCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCC 1200571 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||| || || | || || |||| ||| Sbjct 1200570 TTGTCCTGGATC-TTGGCCTTGACGTTCTCAATGGTATCGGAGGGTTCGACCTCCAAGGT 1200512 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || |||||||| || || ||||| |||||||| ||| Sbjct 1200511 GATGGTCTTGCCGGTTAAAGTCTTGACAAAGATCTGCATATTG 1200469 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | ||||||| |||||||| | ||| ||||||||| ||||| || || | Sbjct 1201157 CGCCACCACGTAGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCGG 1201098 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || || |||| ||||| || || || ||||| || || ||||| ||||| || | Sbjct 1201097 ACAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGG 1201038 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || || | ||| || || | ||| Sbjct 1201037 GAATACCCTCCTTGTCCTGGATC-TTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCG 1200979 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| ||| || || || ||||| || || || ||||| |||||||| Sbjct 1200978 ACCTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200929 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||||| | ||| ||||||||| ||||| || || || || || || Sbjct 1200918 AGACGCAGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGT 1200859 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || ||||| || || ||||| ||||| || || | |||||| Sbjct 1200858 CCGTCCTCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCC 1200799 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | ||| || || | ||| || |||| ||| Sbjct 1200798 TTGTCCTGGATC-TTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGT 1200740 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| || || || ||||| |||||||| Sbjct 1200739 GATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200701 >seq4595 Length=987418 Score = 111 bits (122), Expect = 1e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| ||||| || |||||| || ||||| || || || | || || Sbjct 268506 AGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGA 268565 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || ||||| || || | |||||| || || || || | ||||||| Sbjct 268566 CCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCC 268625 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | ||| || | || || || | ||| || |||| ||| Sbjct 268626 TTGTC-CTGAATTTTGGCTTTCACATTCTCGATCGTATCGGAGGGCTCAACCTCCAGGGT 268684 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || ||||| || || || || |||||||| |||||||| ||| Sbjct 268685 AATGGTTTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTTG 268727 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || | ||| |||||| || ||||| ||||| || | || || Sbjct 267366 AGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAATCGGACAAAGTGCGA 267425 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||| || ||||| || || |||||||| || || || || | ||||||| Sbjct 267426 CCGTCCTCCAGTTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGGATTCCCTCC 267485 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || ||| | ||| ||||| ||| || |||| || Sbjct 267486 TTGTCCTGGAT-TTTGGCCTTCACGTTCTCAATAGTGTCCGACGGCTCTACCTCCAGAGT 267544 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| ||||| | || ||||| || ||||||||| Sbjct 267545 GATGGTTTTTCCGGTAAGGGTCTTCACGAAGATCTGCATG 267584 Score = 100 bits (110), Expect = 2e-16 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||| | ||| |||||| || || || ||||| || || || ||| Sbjct 267822 AGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAATCAGACAGAGTGCGC 267881 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||| || || ||||| || || | |||||| || || || || | ||||||| Sbjct 267882 CCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCC 267941 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 ||||| ||| ||| | || || | || ||||| || | |||||| |||| Sbjct 267942 TTGTCCTGGAT-TTTGGCCTTTACATTCTCGATAGTGTC--CGATGGCTCCACCTCCAGA 267998 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || | || ||||| || ||||||||| Sbjct 267999 GTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCATG 268040 Score = 100 bits (110), Expect = 2e-16 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| ||||| || ||||| || ||||| || || || | || || Sbjct 268050 AGACGCAAGACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGT 268109 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||||||| || || |||||||| || | |||||| || || || || | ||||||| Sbjct 268110 CCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCC 268169 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 ||||| ||| ||| | || || | || ||||| || | |||||| |||| Sbjct 268170 TTGTCCTGGAT-TTTGGCCTTCACATTCTCGATGGTGTC--CGATGGCTCCACCTCCAGA 268226 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || ||||| | || ||||| || ||||||||| Sbjct 268227 GTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCATG 268268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314707528996682