Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4595 145 7e-30 seq5446 140 3e-28 seq5380 140 3e-28 seq5614 127 2e-24 seq4758 107 2e-18 >seq4595 Length=987418 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||| ||| | || ||||| || ||||| || || Sbjct 267811 ATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACCATCACTCTGGAGGTGGAGCCATCG 267752 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || |||||||| || || || || || || ||||| Sbjct 267751 GACACCATCGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAG 267692 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | ||||| | || | |||||||||||| Sbjct 267691 CAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGCACTTTGTCCGATTACAAC 267632 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| |||||| | || |||||||| Sbjct 267631 ATCCAGAAGGAGTCAACCCTCCACTTGGTCTTGCGTCTCCGTGGTGGCAT 267582 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||| || | || ||||| || || || ||||| Sbjct 267584 CATGCAGATCTTCGTGAAGACCCTTACCGGAAAAACCATCACTCTGGAGGTAGAGCCGTC 267525 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || ||||| || ||||| || || || || || ||||| Sbjct 267524 GGACACTATTGAGAACGTGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCTCCAGATCA 267465 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||||||||| ||| |||| ||| || || | ||||||||||| Sbjct 267464 GCAGCGTTTGATTTTCGCCGGCAAGCAACTGGAGGACGGTCGCACTTTGTCCGATTACAA 267405 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||| || || || ||||| | ||| | || || || Sbjct 267404 CATCCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGTCTCCGCGGAGG 267357 >seq5446 Length=1541693 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || ||||| || ||||||||| | ||||| | || |||||||| | Sbjct 1371320 CCATGCAAATCTTCGTTAAAACCCTTACCGGCAAGACCATTACCTTGGAGGTGGAACCTT 1371261 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | || |||| || || || ||||| || || || || || || || |||| Sbjct 1371260 CGGACACCATCGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCAGATC 1371201 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||| | || | |||||||||||| |||| || | ||| | ||||| |||| Sbjct 1371200 AGCAGCGTCTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACCCTGTCCGACTACA 1371141 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||||||| | || ||||| | || |||| ||||| || Sbjct 1371140 ACATCCAGAAGGAGTCGACCCTCCACTTGGTGCTTCGCCTGCGTGGTGGTAT 1371089 >seq5380 Length=870010 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || || ||||| || |||||||| Sbjct 656582 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAACCGTCG 656641 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| ||||||||||| || || || ||||| Sbjct 656642 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 656701 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || ||||||| || ||| | || ||||| ||| Sbjct 656702 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGATTATAAC 656761 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || || || ||||| | || | || ||||| Sbjct 656762 ATTCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGACTTCGTGGTGG 656808 >seq5614 Length=3457230 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| | ||||||||| | || || | || || ||||| ||| Sbjct 1200473 ATGCAGATCTTTGTCAAGACTTTAACCGGCAAGACCATCACCTTGGAGGTCGAACCCTCC 1200532 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| || || || ||||| || || || || || || || Sbjct 1200533 GATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1200592 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || ||||| || | || ||| | || | || || |||||| Sbjct 1200593 CAGCGATTGATCTTTGCTGGCAAGCAGCTTGAGGACGGACGCACTCTGTCGGACTACAAC 1200652 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || || |||||||| ||||| |||| ||||| || Sbjct 1200653 ATCCAAAAGGAGTCTACTTTGCATTTGGTCCTGCGTCTGCGTGGTGGTAT 1200702 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| ||||||||||| | || || | || || || || ||| Sbjct 1200701 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCC 1200760 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| || || || ||||| || || || || || || || Sbjct 1200761 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1200820 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || ||||| || | || ||| | || | || || |||||| Sbjct 1200821 CAGCGATTGATCTTTGCTGGCAAGCAGCTTGAGGACGGACGCACTCTGTCGGACTACAAC 1200880 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || || |||||||| ||||| |||| ||||| || Sbjct 1200881 ATCCAAAAGGAGTCTACTTTGCATTTGGTCCTGCGTCTGCGTGGTGGTAT 1200930 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| ||||||||||| | || || | || || || || ||| Sbjct 1200929 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCC 1200988 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| || || || ||||| || || || || || || || Sbjct 1200989 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1201048 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || ||||| || | || ||| | || | ||||| |||||| Sbjct 1201049 CAGCGATTGATCTTTGCTGGCAAGCAGCTTGAGGACGGACGCACTCTGTCCGACTACAAC 1201108 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || ||||||||||| || || |||||||| ||||| | || |||||| Sbjct 1201109 ATCCAAAAGGAGTCTACTTTGCATTTGGTCCTGCGTCTACGTGGTGGC 1201156 >seq4758 Length=893088 Score = 107 bits (118), Expect = 2e-18 Identities = 206/301 (68%), Gaps = 7/301 (2%) Strand=Plus/Minus Query 135465 ATGACCCGTTGTGGAACGCGGCACAACGGCAGCT--TAAGCGAGAAGGCAAAATGCACGG 135522 |||||| |||||||| | || || |||| | || ||||| || ||||||||||| Sbjct 498793 ATGACC---TGTGGAACTCCGCGCAGTTGCAGTTGGTACGCGAG--GGAAAAATGCACGG 498739 Query 135523 ATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGC 135582 || | || ||||| ||||| |||||||| | |||||| |||| | || | | | || Sbjct 498738 CTTCCTCCGTATGTACTGGGCCAAAAAGATCCTTGAATGGACTGCCACTCCGGAACAAGC 498679 Query 135583 GCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGG 135642 ||| | |||| || | |||| || | |||||| | || || || || | || || Sbjct 498678 GCTGGAGTACGCGATCCTGCTTAACGACAAGTACAGTCTCGACGGTCGAGACCCCAACGG 498619 Query 135643 CTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAA 135702 || || || ||||||||||| || | || | || || || ||||||||||| Sbjct 498618 TTATGTGGGATGTATGTGGTCGATCGGAGGCATTCATGACATGGGCTGGAAGGAGCGGGC 498559 Query 135703 AGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAA 135762 | || || ||| |||| | |||||||||| | || || | |||| || |||| || Sbjct 498558 TATCTTCGGTAAGGTTCGGTTTATGAACTATCAGGGCTGCAAGCGAAAGTTCGATGTGAA 498499 Query 135763 T 135763 | Sbjct 498498 T 498498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434887118494080