Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5466 174 1e-38 >seq5466 Length=1802269 Score = 174 bits (192), Expect = 1e-38 Identities = 427/646 (66%), Gaps = 6/646 (1%) Strand=Plus/Plus Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC 6612 ||||||||| |||| ||||| || |||| || ||||| | || || || | || Sbjct 949234 GTGGTTCAGATAGACGTGCGCGTCACCCAGGGTGTGCACGAAGTCGCCCGGCTTGAGACC 949293 Query 6613 CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672 | ||||| || |||||||| |||||||| ||||| || || || || || || || Sbjct 949294 CGTTACATGGGCAATCATGTAGGTGAGCAGGGCGTAGGACGCGATATTAAAGGGTACGCC 949353 Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCA----TTCGCGA 6728 | |||||||| | | || || ||||||||||| || || || || | || Sbjct 949354 CAGGCCCATGTCGGCACTCCTCTGGTACAGCTGGCAGGAAAGTTCACCGCGCGTTTGGGA 949413 Query 6729 --CGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 ||||||| || ||| |||||||| || || ||||| || | ||| ||| Sbjct 949414 AACGTAGAACTGCGCCAGGCAATGGCACGGAGGAAGAGCCATTTTCGGTATGTCCAACGG 949473 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 |||||||| |||| | ||| | ||||| ||||| ||| | |||||||||||| Sbjct 949474 ATTCCACGCCGACATGATGATGCGCCTGTCCGACGGGTTGTTCTTAATGGTGTCGATCAC 949533 Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGC 6906 | ||| |||||| | |||| || | ||||| | |||| | |||||||| Sbjct 949534 ATGGCGCAACTGGTCGACGCCCTTGCCTGTGTAGTCGTCGTCGCAGGTTCCGTACTCCGC 949593 Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG 6966 ||||||||| | ||||||||| || || ||||| |||| || ||| | | || | Sbjct 949594 CCCAAAGTGGCGCCACTGGAAGCCATACACCGGTCCCAGATCACCCACGGCGCGCTCCGT 949653 Query 6967 GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCG 7026 | ||| ||||||| || || |||| || | || | |||||||| | || | Sbjct 949654 GTGTCCCAGCTTGTCTAGGAACTCTCTAGTGCAGTTCTCATCCCAGATGTGAACGTTCTT 949713 Query 7027 GGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCAC 7086 | | || ||||| || ||| ||| ||||||||| |||||||||||| |||| Sbjct 949714 CGCCTGCAGTAGCTTGGCGTCCGTCTTGCCCGCCACGAACCAGAGCAGCTCCTCGGCCAC 949773 Query 7087 GCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCG 7146 || || | || || || |||||||||| ||||| ||| | ||| | || Sbjct 949774 CCCGCGAAAGAAGACGCGCTTGGTCGTCAGCAAAGGAAAAGAATCCCTCAAGTTAAACCG 949833 Query 7147 GGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCC 7192 ||| |||| || ||||| || || || || ||||||||| Sbjct 949834 CATCTGACTGCCAAAGACGGATAGAGTGCCAACCCTTGTCCGGTCC 949879 Score = 174 bits (192), Expect = 1e-38 Identities = 427/646 (66%), Gaps = 6/646 (1%) Strand=Plus/Minus Query 34153 GGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCG 34212 ||||||||| || || || || ||||| || |||| ||| || | ||| | | Sbjct 949879 GGACCGGACAAGGGTTGGCACTCTATCCGTCTTTGGCAGTCAGATGCGGTTTAACTTGAG 949820 Query 34213 GGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCT 34272 || ||||| |||||||||| || || || | || || |||| ||||||||| Sbjct 949819 GGATTCTTTTCCTTTGCTGACGACCAAGCGCGTCTTCTTTCGCGGGGTGGCCGAGGAGCT 949760 Query 34273 GCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGAT 34332 ||| ||||||||| ||| ||| || ||||| || | | | || | || Sbjct 949759 GCTCTGGTTCGTGGCGGGCAAGACGGACGCCAAGCTACTGCAGGCGAAGAACGTTCACAT 949700 Query 34333 CTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGA 34392 |||||| | || | || |||| || || ||||||| ||| | | || | | Sbjct 949699 CTGGGATGAGAACTGCACTAGAGAGTTCCTAGACAAGCTGGGACACACGGAGCGCGCCGT 949640 Query 34393 GGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGG 34452 ||| || |||| ||||| || || ||||||||| | ||||||||||||||||| | Sbjct 949639 GGGTGATCTGGGACCGGTGTATGGCTTCCAGTGGCGCCACTTTGGGGCGGAGTACGGAAC 949580 Query 34453 GAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT 34512 |||| | ||||| | || |||| | |||||| ||| | |||||||||||| | Sbjct 949579 CTGCGACGACGACTACACAGGCAAGGGCGTCGACCAGTTGCGCCATGTGATCGACACCAT 949520 Query 34513 GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCC 34572 ||| ||||| ||||| | ||| | |||| |||||||| ||| ||| | || Sbjct 949519 TAAGAACAACCCGTCGGACAGGCGCATCATCATGTCGGCGTGGAATCCGTTGGACATACC 949460 Query 34573 TCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACG--TCGCGAA----TGG 34626 ||||| || || |||||||| ||| || ||||||| || | || || Sbjct 949459 GAAAATGGCTCTTCCTCCGTGCCATTGCCTGGCGCAGTTCTACGTTTCCCAAACGCGCGG 949400 Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686 || || ||||||||||| || || | | |||||||| | || || || || || Sbjct 949399 TGAACTTTCCTGCCAGCTGTACCAGAGGAGTGCCGACATGGGCCTGGGCGTACCCTTTAA 949340 Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGG 34746 || || ||||| |||||||| |||||||| || ||||| ||| | || || Sbjct 949339 TATCGCGTCCTACGCCCTGCTCACCTACATGATTGCCCATGTAACGGGTCTCAAGCCGGG 949280 Query 34747 GGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCAC 34792 || | ||||| || |||| || ||||| |||| ||||||||| Sbjct 949279 CGACTTCGTGCACACCCTGGGTGACGCGCACGTCTATCTGAACCAC 949234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448230158726880