Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq5466 87.8 1e-12 >seq5466 Length=1802269 Score = 87.8 bits (96), Expect = 1e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 118465 TTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCA 118524 |||||||| || | ||| |||| |||||| || || || || | || || | ||| || Sbjct 949220 TTCAGTGGTTCCACGTGGTTCAGATAGACGTGCGCGTCACCCAGGGTGTGCACGAAGTCG 949279 Query 118525 CCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACA 118584 || || | || || || | || ||||||||||| || | || |||| || | | Sbjct 949280 CCCGGCTTGAGACCCGTTACATGGGCAATCATGTAGGTGAGCAGGGCGTAGGACGCGATA 949339 Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || || ||||| |||||||| || |||||||||| ||||| || || || Sbjct 949340 TTAAAGGGTACGCCCAGGCCCATGTCGGCACTCCTCTGGTACAGCTGGCAGGAAAGTTCA 949399 Query 118645 CCG 118647 ||| Sbjct 949400 CCG 949402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414447734037256