Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5614 96.9 2e-15 seq4595 87.8 1e-12 >seq5614 Length=3457230 Score = 96.9 bits (106), Expect = 2e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| || ||||| || || || ||||| || || || | || Sbjct 1201022 GACAAGGAGGGTATTCCCCCAGACCAGCAGCGATTGATCTTTGCTGGCAAGCAGCTTGAG 1201081 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| ||||||| |||||||||||||| ||| |||||||||||||| || Sbjct 1201082 GACGGACGCACTCTGTCCGACTACAACATCCAAAAGGAGTCTACTTTGCATTTGGTCCTG 1201141 Query 28003 CGTTTGCGTGGCGGCG 28018 ||| | ||||| |||| Sbjct 1201142 CGTCTACGTGGTGGCG 1201157 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| || ||||| || || || ||||| || || || | || Sbjct 1200566 GACAAGGAGGGTATTCCCCCAGACCAGCAGCGATTGATCTTTGCTGGCAAGCAGCTTGAG 1200625 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| |||| || |||||||||||||| ||| |||||||||||||| || Sbjct 1200626 GACGGACGCACTCTGTCGGACTACAACATCCAAAAGGAGTCTACTTTGCATTTGGTCCTG 1200685 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 1200686 CGTCTGCGTGGTGG 1200699 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| || ||||| || || || ||||| || || || | || Sbjct 1200794 GACAAGGAGGGTATTCCCCCAGACCAGCAGCGATTGATCTTTGCTGGCAAGCAGCTTGAG 1200853 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| |||| || |||||||||||||| ||| |||||||||||||| || Sbjct 1200854 GACGGACGCACTCTGTCGGACTACAACATCCAAAAGGAGTCTACTTTGCATTTGGTCCTG 1200913 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 1200914 CGTCTGCGTGGTGG 1200927 >seq4595 Length=987418 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || ||||| ||||| || ||| |||| |||| |||| ||||||||| Sbjct 267469 GATCAGCAGCGTTTGATTTTCGCCGGCAAGCAACTGGAGGACGGTCGCACTTTGTCCGAT 267410 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| |||||||| ||||| | ||| | || || || Sbjct 267409 TACAACATCCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGTCTCCGCGGAGG 267357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355837444481958