Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5614 98.7 9e-16 seq4595 91.5 1e-13 >seq5614 Length=3457230 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| | || ||| ||||| || || || |||| || || ||| |||| ||| Sbjct 1201137 ACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCA 1201078 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || | ||||||||||| | ||| | | ||| |||||| | Sbjct 1201077 AGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 1201018 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | |||||| | ||| || |||| ||||| | || Sbjct 1201017 ATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTCTTG 1200958 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || |||||||| ||||| Sbjct 1200957 CCGGTCAAAGTCTTGACAAAGATCTGCAT 1200929 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| | || ||| ||||| || || || || | || || ||| |||| ||| Sbjct 1200909 ACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTCCTCA 1200850 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || | ||||||||||| | ||| | | ||| |||||| | Sbjct 1200849 AGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 1200790 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | |||||| | ||| || |||| ||||| | || Sbjct 1200789 ATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTCTTG 1200730 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || |||||||| ||||| Sbjct 1200729 CCGGTCAAAGTCTTGACAAAGATCTGCAT 1200701 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| | || ||| ||||| || || || || | || || ||| |||| ||| Sbjct 1200681 ACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTCCTCA 1200622 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || | ||||||||||| | ||| | | ||| |||||| | Sbjct 1200621 AGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 1200562 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | |||||| | || || |||| ||||| | || Sbjct 1200561 ATCTTGGCCTTGACGTTCTCAATGGTATCGGAGGGTTCGACCTCCAAGGTGATGGTCTTG 1200502 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || || | || || |||||||| ||||| || Sbjct 1200501 CCGGTTAAAGTCTTGACAAAGATCTGCATATT 1200470 >seq4595 Length=987418 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || ||| || || || || || |||| | || || || Sbjct 268509 CGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACCG 268568 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| ||||| || || || ||||||||||| || | || | | ||| ||| Sbjct 268569 TCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTG 268628 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||||| ||| | || | | ||||||| | ||| || |||| || || Sbjct 268629 TCCTGAATTTTGGCTTTCACATTCTCGATCGTATCGGAGGGCTCAACCTCCAGGGTAATG 268688 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||||| |||| || || |||||||| ||||| || Sbjct 268689 GTTTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 268726 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| | || ||| || || ||||| ||||| | || || || | || || Sbjct 267830 CACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAATCAGACAGAGTGCGCCCATCTTC 267889 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || || ||||||||||| || | || | | ||| |||||| Sbjct 267890 AAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTG 267949 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| || | || | | || || | |||||| |||| ||||| | || Sbjct 267950 GATTTTGGCCTTTACATTCTCGATAGTGTCCGATGGCTCCACCTCCAGAGTGATGGTCTT 268009 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||||| || || || ||||| ||||| Sbjct 268010 TCCAGTCAGGGTCTTCACGAAGATCTGCAT 268039 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || || || || || || |||| | || ||| | Sbjct 268053 CGCAAGACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGTCCA 268112 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| ||||| ||||| || ||||||||||| || | || | | ||| ||| Sbjct 268113 TCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTG 268172 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||| || | || | | || || | |||||| |||| ||||| Sbjct 268173 TCCTGGATTTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTGATG 268232 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| ||||| || || || ||||| ||||| Sbjct 268233 GTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 268267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429515477309402