Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4595 143 2e-29 seq5380 125 5e-24 seq5446 93.3 3e-14 >seq4595 Length=987418 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || |||||||| |||||||| || || || | || Sbjct 267583 ATGCAGATCTTCGTGAAGACCCTTACCGGAAAAACCATCACTCTGGAGGTAGAGCCGTCG 267524 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || ||||| ||||| || || | || |||||||| Sbjct 267523 GACACTATTGAGAACGTGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCTCCAGATCAG 267464 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || |||||||| |||||||| |||| |||||||| |||||||||| Sbjct 267463 CAGCGTTTGATTTTCGCCGGCAAGCAACTGGAGGACGGTCGCACTTTGTCCGATTACAAC 267404 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || || || || || Sbjct 267403 ATCCAGAAGGAGTCTACTTTGCACTTGGT 267375 Score = 118 bits (130), Expect = 7e-22 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| || ||||| || |||||||| || || || | | Sbjct 267812 AATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACCATCACTCTGGAGGTGGAGCCATC 267753 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | || | || | || || || || || | || ||||||| Sbjct 267752 GGACACCATCGAGAATGTGAAGGCCAAGA-TTCAAGATAAGGAGGGAATTCCTCCAGATC 267694 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || || |||||||| || || ||||| | ||||||||| |||||||| Sbjct 267693 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGCACTTTGTCCGATTACA 267634 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 267633 ACATCCAGAAGGAGTCAAC 267615 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || ||||| || |||||||| || || || | || Sbjct 268267 ATGCAGATCTTCGTGAAGACCCTGACCGGAAAGACCATCACTCTGGAGGTGGAGCCATCG 268208 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | |||| | ||||| || || | || |||||||| Sbjct 268207 GACACCATCGAGAATGTGAAGGCCAAAA-TCCAGGACAAGGAGGGAATTCCTCCAGATCA 268149 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || || ||||| | ||||||||| ||| ||||| Sbjct 268148 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGCACTTTGTCCGACTACAA 268089 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 268088 CATCCAGAAGGAATCGAC 268071 Score = 107 bits (118), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||| | || |||||||| || || || || ||||| || Sbjct 268726 AAAATGCAGATCTTTGTGAAGACCTTGACTGGAAAAACCATTACCCTGGAGGTTGAGCCC 268667 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | ||| | |||||| ||||| || || | || ||||| Sbjct 268666 TCCGATACGATCGAGAATGTGAAAGC-CAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 268608 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || |||||||| || || || |||| || ||||| ||| || Sbjct 268607 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGTCCGACTA 268548 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 268547 CAACATCCAGAAGGAGTCAAC 268527 >seq5380 Length=870010 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| |||||||| ||||||||||| || || ||||| || || || || | Sbjct 656579 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAACCG 656638 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| ||| | |||| | ||| || ||| ||||||||||| | || |||||| Sbjct 656639 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 656698 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || ||||| || |||||||| | ||||| | ||||| Sbjct 656699 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGATTAT 656758 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || || |||||||| || || || || Sbjct 656759 AACATTCAGAAGGAGTCCACTTTGCACTTGGT 656790 >seq5446 Length=1541693 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||||||||| || || || || || || | || || || | || Sbjct 1371318 ATGCAAATCTTCGTTAAAACCCTTACCGGCAAGACCATTACCTTGGAGGTGGAACCTTCG 1371259 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || || || || || | || |||||||| Sbjct 1371258 GACACCATCGAGAATGTGAAGGCCAAGA-TTCAGGATAAGGAGGGAATCCCCCCAGATCA 1371200 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||||||||| ||||| || | |||||| | ||| ||||| Sbjct 1371199 GCAGCGTCTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACCCTGTCCGACTACAA 1371140 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1371139 CATCCAGAAGGAGTCGAC 1371122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337985896443032