Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4595 150 4e-31 seq5446 125 2e-23 seq5380 122 2e-22 seq5583 89.7 1e-12 >seq4595 Length=987418 Score = 150 bits (166), Expect = 4e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || ||| | |||||| || || || || |||| |||||||||| |||||| Sbjct 267590 ACGGAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAAAGT 267649 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| || |||||||| || || || || || || ||||| || Sbjct 267650 GCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 267709 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||| ||||| ||||||| ||||||||||| || | ||||| || | Sbjct 267710 CTCCTTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAG 267769 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || |||| || || | ||| | |||||| Sbjct 267770 AGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCATT 267812 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || ||| | |||||| || ||||| || |||| ||||| |||| |||||| Sbjct 268046 ACGGAGACGCAAGACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGT 268105 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| || || ||||| || || || || || || ||||| || Sbjct 268106 GCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCC 268165 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||| || ||||||| ||||||||||| || | ||||| || | Sbjct 268166 CTCCTTGTCCTGGATTTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAG 268225 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || |||| || || | ||| | ||||| Sbjct 268226 AGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 268267 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || ||| | |||||| || ||||| || |||| ||||| |||| |||||| Sbjct 268274 ACGGAGACGCAAGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAAGT 268333 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || ||||| || || || || || || || ||||| || Sbjct 268334 ACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGAATTCC 268393 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||| ||||| ||||||| ||||||||||| || | ||||| || | Sbjct 268394 CTCCTTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAG 268453 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | || || | ||| | ||||| Sbjct 268454 AGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 268495 >seq5446 Length=1541693 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || || || || |||| ||||| |||| || || | ||||| Sbjct 1371107 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCC 1371166 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || |||||||| || || || || || || || || || ||||| || Sbjct 1371167 TCCAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCC 1371226 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||||| ||||||||||| || | |||||| || || || || ||| Sbjct 1371227 TGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGTTCCACCTCCAAGGTAATGGTC 1371286 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||||| | ||| | |||||| Sbjct 1371287 TTGCCGGTAAGGGTTTTAACGAAGATTTGCAT 1371318 >seq5380 Length=870010 Score = 122 bits (134), Expect = 2e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || || | ||| | |||||| || || || | || ||||| | | || Sbjct 656803 ACGAAGTCGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGAGAGGGT 656744 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || || || || || || ||||| || Sbjct 656743 GCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 656684 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| || ||||| || ||| |||||| || || || | ||| || || | Sbjct 656683 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAG 656624 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||||||||| | || || | ||| | ||||| || Sbjct 656623 GGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 656579 >seq5583 Length=19632 Score = 89.7 bits (98), Expect = 1e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 372624 GGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGT 372683 |||| ||||| || |||||||||||||||| |||||||||||| ||| || |||| || Sbjct 14674 GGTGGCACAGACCAGGGGGTAGCGACTGTTTAGTAAAAACACAGGGCTCTGCGAAGTCGT 14733 Query 372684 AAAACGATGTATAGGGTCTGAC 372705 || |||| |||||||| ||||| Sbjct 14734 AAGACGACGTATAGGGCCTGAC 14755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192443282873276