Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq5466 176 4e-39 >seq5466 Length=1802269 Score = 176 bits (194), Expect = 4e-39 Identities = 272/386 (70%), Gaps = 8/386 (2%) Strand=Plus/Plus Query 29610 TGGGAAAGGGTC-TGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGG 29668 |||||||||| | ||| | | || ||||| | |||| ||||||||||||| || Sbjct 949185 TGGGAAAGGGACGTGGAGTGCGCGTC-AGCTGCTCCTTCAGTGGTTCCACGTGGTTCAGA 949243 Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 |||||||| || || ||||||||||| || || || ||||| | || || || || || Sbjct 949244 TAGACGTGCGCGTCACCCAGGGTGTGCACGAAGTCGCCCGGCTTGAGACCCGTTACATGG 949303 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 || |||||||| ||||| || | |||| ||||| |||||||| || || || |||||| Sbjct 949304 GCAATCATGTAGGTGAGCAGGGCGTAGGACGCGATATTAAAGGGTACGCCCAGGCCCATG 949363 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG------TCGCTCACGTAAAAC 29842 || | ||||||||| |||||||| || || || ||| | | ||||| ||| Sbjct 949364 TCGGCACTCCTCTGGTACAGCTGGCAGGAAAGTTCACCGCGCGTTTGGGAAACGTAGAAC 949423 Query 29843 TGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCA 29902 || || | ||||||||||||||| ||||| | ||| || ||||| || Sbjct 949424 TGCGCCAGGCAATGGCACGGAGGAAGAGCCATTTTCGGTATGTCCAACGGATTCCACGCC 949483 Query 29903 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGC 29962 ||| ||||||||||||||| ||||||||| | ||| ||| | | | ||| | Sbjct 949484 GACATGATGATGCGCCTGTCCGACGGGTTGTTCTTAATGGTGTCGATCACATGGCGCAAC 949543 Query 29963 TGATCCACCCCCATCCCCGAGTAGTC 29988 || || || ||| | || | |||||| Sbjct 949544 TGGTCGACGCCCTTGCCTGTGTAGTC 949569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406134717044044