Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq5351 113 4e-20 >seq5351 Length=991022 Score = 113 bits (124), Expect = 4e-20 Identities = 478/744 (64%), Gaps = 16/744 (2%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 ||||||||| || ||| ||||| || || || ||||| || | |||||| | ||| Sbjct 257270 TGGTATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGCGAAATCATCTCC 257329 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAGCAA 4378 || || | ||| || || | | |||||| || ||| || | | | || ||||| Sbjct 257330 ATGAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAACTCC-ACCAGCAA 257388 Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 ||||| || || || || |||||||| ||| || ||||| || || || || | | Sbjct 257389 ACGGTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATGCCGATAAGGTT 257448 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 ||| || || || | || | ||||| || || || | || || || || || || Sbjct 257449 CACTGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCGCGAATGATTTC 257508 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC-GCAAAAT 4557 | || ||| ||| | || | || |||| | | ||| || |||| Sbjct 257509 AATGATGCGCTCTCGCTTGGGTCGCTGCACAAGGTGCTGGAACA-TCAGCACTGCGAAAT 257567 Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 | ||||||| ||| ||||| || ||||| ||||| || || || | ||| ||||| | Sbjct 257568 CGCAATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATCA 257627 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAA--TGACCCAGAAAAGAATATGCCTTC 4675 |||| ||| || ||||| || || | ||| || || | | ||| ||| |||||||| Sbjct 257628 GGCCTCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA--GAAGATGCCTTC 257685 Query 4676 TACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT---TTGTCTTTAATCCA 4732 ||||||||||| || | | || ||||| || ||||| ||| ||||| Sbjct 257686 CACGGCGGCAAAGGCGATGATGCGCTCCCCGA---AGTTGGCTGACTTGGAGGAGATCCA 257742 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 | ||||||| ||| || ||| || ||| || || | || ||||| || | Sbjct 257743 GGACATGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTTTCGATGGCGTTGAA-CA 257801 Query 4793 TTTACT-TTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAG 4851 |||| | | || || | || || ||||| || || | || ||||| || | Sbjct 257802 GGTACTCTCGCTGGTGCGGATCGCGGATGTATGTGTCGATCAGCACACTGTACATCTCCG 257861 Query 4852 AATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAA 4911 | || | || || || || ||||| || ||||| ||||| | || ||||| | || | Sbjct 257862 AGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTGTGATCTGCA 257921 Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 | || | | || | || || | || || || || || || || |||||| || | Sbjct 257922 CCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTGACAATGCCATCGGAGGCTGCGAAGA 257981 Query 4972 ACGCCAAAACATGAGATATAAAGT 4995 | ||||| || || || ||||||| Sbjct 257982 AGGCCAACACGTGCGAAATAAAGT 258005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427019652346082