Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq5466 217 1e-51 >seq5466 Length=1802269 Score = 217 bits (240), Expect = 1e-51 Identities = 436/635 (69%), Gaps = 20/635 (3%) Strand=Plus/Plus Query 27104 TGGGAAAGGGTC-TGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGG 27162 |||||||||| | ||| | | || ||||| |||||| ||||||||||| | ||| Sbjct 949185 TGGGAAAGGGACGTGGAGTGCGCGTC-AGCTGCTCCTTCAGTGGTTCCACGTGGTTCAGA 949243 Query 27163 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 27222 |||||||| ||||| ||||||||||| || || || ||||| | || || || || || Sbjct 949244 TAGACGTGCGCGTCACCCAGGGTGTGCACGAAGTCGCCCGGCTTGAGACCCGTTACATGG 949303 Query 27223 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 27282 || |||||||| ||||| || | |||| ||||| ||||||||||| || || |||||| Sbjct 949304 GCAATCATGTAGGTGAGCAGGGCGTAGGACGCGATATTAAAGGGTACGCCCAGGCCCATG 949363 Query 27283 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-ATCGCTT-----ACGTAAAAC 27336 || | ||||||||| ||||| || || || || || || || ||||| ||| Sbjct 949364 TCGGCACTCCTCTGGTACAGCTGGCAGGAAAGTTCACCGCGCGTTTGGGAAACGTAGAAC 949423 Query 27337 TGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCG 27396 || | | |||||||||||||||||||| | ||| || ||||| || Sbjct 949424 TGCGCCAGGCAATGGCACGGAGGAAGAGCCATTTTCGGTATGTCCAACGGATTCCACGCC 949483 Query 27397 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGC 27456 ||| ||||||||||||||| ||||||||| | ||| ||| | | | ||| | Sbjct 949484 GACATGATGATGCGCCTGTCCGACGGGTTGTTCTTAATGGTGTCGATCACATGGCGCAAC 949543 Query 27457 TGATCCACCCCCATCCCCGAGTAGTC-TACCCTCATGTCCGTGTACTCTGCTCCGAAATG 27515 || || || ||| | || | |||||| | | || || | |||||| || || || || Sbjct 949544 TGGTCGACGCCCTTGCCTGTGTAGTCGTCGTCGCAGGTTC-CGTACTCCGCCCCAAAGTG 949602 Query 27516 CCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCT 27575 | ||| ||||| || |||||||||||||| || ||| | | | | | | ||| Sbjct 949603 GCGCCACTGGAAGCCATACACCGGTCCCAGATCACCCACGGCGCGCTCCGTGTGTCCCAG 949662 Query 27576 CTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC--GGAG 27633 |||||| | || ||||| | | ||| | |||||||| | || |||| | | || Sbjct 949663 CTTGTCTAGGAACTCTCTAGTGCAGTTCTCATCCCAGATGTGAACGTTCTTCGCCTGCAG 949722 Query 27634 -AGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 27692 ||| |||| || || || |||||||| ||||||||||| | || || Sbjct 949723 TAGC---TTGGCGTCCGTCTTGCCCGCCACGAACCAGAGCAGCTCCTCGGCCAC--CCCG 949777 Query 27693 CCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 | || ||||| | ||||||||| || | ||||| Sbjct 949778 CGAAAGAAGACGCGCTTGGTCGTCAGCAAAGGAAA 949812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369481287614774