Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5380 471 6e-128 seq5351 138 2e-27 >seq5380 Length=870010 Score = 471 bits (522), Expect = 6e-128 Identities = 1247/1885 (66%), Gaps = 28/1885 (1%) Strand=Plus/Plus Query 75365 TTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATA 75424 ||||| |||| ||||||||||||| | ||| || ||||| || ||||||||||| Sbjct 557583 TTCTTGTCCACGGTGAACTGAATGGCGTTTGCTGCCGGCTTTGTGCGCAGATAGTACATT 557642 Query 75425 CCAGTTTTTAGACCCAGACT-CCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 || ||||| || ||||| | ||| ||| || || ||| || || || || | Sbjct 557643 CCGGTTTTAAG-CCCAGCTTTCCAGGAGTAAAAGTGTATGGACGTAAGCTTTCCGTAGTT 557701 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 || || || | |||||| || | ||||| ||||||||||||||||| |||| |||||| Sbjct 557702 TGGCTCTGCCACATGAATGTTGAAGGACTGGCTTTGATCGATGAAAGCACCTCGATCAGC 557761 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603 |||||||| ||| | | ||| || |||||||| | |||||| ||| | | || Sbjct 557762 GGCCATTTTAATAGTAGACTTCACAGAGATTTCCCACACGGTTTTGTAAAGATCTCGGAC 557821 Query 75604 ATCATCTGGAA--GATTTG-TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660 | | || | | || | | ||||||||||| || | || || ||| ||||| Sbjct 557822 CTTCTGCGGGATGGCTTCGATGTTTTGAATGGAGCCCCTGCTGGAAATTATTTGGTTCTT 557881 Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 || ||||| | |||||| | || || | | || | | ||| | || || | Sbjct 557882 CATATCATCGTCCCACAAGTCCAATTCAGTCAGGTCCCTCAACAAGTGATGGTTGACCAC 557941 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||||||||| || |||| |||| || ||||||||||||| | ||||| || || | ||| Sbjct 557942 TTGAAATTCGCCGGACAGAACTCGTCTAGTGTAAATATTAGTCGTATACGGCTCGAAAGA 558001 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 ||| ||||| |||| ||| || ||||| || ||||| |||||||| ||||| | | Sbjct 558002 TTCGTTGTTGCCCATAATCTGGGCAGTAGATGCAGTGGGCATAGGAGCCACAAGCAGGGA 558061 Query 75841 ATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGA 75900 || |||| ||| || | |||| || || || | | ||| ||||| || | | Sbjct 558062 GTTCCTGACACCGTGCTTCTTGATCGACTCCTTCAGTTTCTGCCAGTCCCACAGGTTCGT 558121 Query 75901 TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATT-AT 75959 ||| ||||| | ||||| || ||||| || || || | | ||| || || Sbjct 558122 TGGCGTTTTGTCCCACATGTCGTACTGCAGAATACCCTTACTTAC-GGGGCTCCCTTCAT 558180 Query 75960 ATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAAT 76019 | |||||||| | || || | ||||| || || ||||| ||||| || || ||||| | Sbjct 558181 AGGTTTCGTATGGACCATCAATCTCAGCCAGCTCACAACTGGCCTCCAAAGCGCCGTAGT 558240 Query 76020 AAATTGTTTCGAAAATCTTCTTATT---AAGATCTTGCGCTTCAAGACTATCAAAAGGAT 76076 |||| ||||| || |||| || ||| |||| | ||||| ||| ||| | || Sbjct 558241 AAATAGTTTCAAATATCTGCTGATTCAAAAGACC---AGCTTCTTCACTTTCATAGGGGA 558297 Query 76077 AATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTC 76136 | | | ||||| || || || || | ||||||||||| || || | || | ||||| Sbjct 558298 ATCGCATGAGAATCAAGGCGTCAGCGAAACCCTGAACTCCGATGCCCACGGGGCGATGTC 558357 Query 76137 TCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGA 76196 || |||||| | | || || || | || ||||| || ||||| || || || || | Sbjct 558358 TCAAATTGGATTTCTTTGCCTCCGGCAGGGGATAATAGTTTATATCGATTATCTTGTTAA 558417 Query 76197 GATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATC--AAATTTTC-CAT 76253 ||||| || || || || || |||||||| ||||| | | ||| | Sbjct 558418 GATTTTTGGTGACCGTCTTGGTAACTTCTTTTAGTTTCTTGAAATCGTACGTCTTCTCGG 558477 Query 76254 CTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT-TAGCA 76312 | | || ||||| ||||| || || ||||| | || || || || | ||||| | || Sbjct 558478 GTGTGACGAACATGTTAAGGGCGATGGATGCCAAGTTGCATACTGCAATCTCATCTGGC- 558536 Query 76313 TTGGCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369 ||| || | || || || ||||| || || || ||||||||||| |||| ||| Sbjct 558537 ---GCAGAGTACTCTACGATTTCTGTGCAAAGGTTGCTGCACTTGATAGTGCCAACATTC 558593 Query 76370 TGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCA 76429 || ||||||||||| ||| || | || ||| | || | | | ||| |||| ||||| Sbjct 558594 TGCTGGTTGCTCTTCCGGTTGCAGGCATCTTTAAAGAGCATATAAGGATTTCCCGTTTCC 558653 Query 76430 ATCTGTGATTCGATAATAGATTTCCA-GACGACTCTAGCTTTTATTA-TAGATTTGTATC 76487 | ||| | || ||||| | ||| | |||| ||| || | || | | || | | | Sbjct 558654 ACCTGCGCCTCAATAATCGCGAACCACAAGGACT-GAGCCTTAACTACTCGGTTGGCA-C 558711 Query 76488 GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCA 76547 | |||| || || | || | | ||||||||| || ||||||||||| | | Sbjct 558712 GACCCTCTTGCTCGTACTTCAAGTACAGCTTTTCAAATTCGTCGCCCCAAACATCGTGAA 558771 Query 76548 AACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCA 76607 || || |||| || |||||||| | ||||| || | | ||| || ||||||| Sbjct 558772 GGCCGGGGCATTTATGAGGACACATGAGGGACCAATCCTCGTTGGCCTCTACACGTTTCA 558831 Query 76608 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTC 76667 | |||||||| |||||||| | || |||| || || | | | ||||| |||| Sbjct 558832 TGAAGAGATCGGGTATCCACAAGGCGTAGAATAAGTCGCGTGCACGATTCTCTTCCTTTC 558891 Query 76668 CTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 76727 | || || || || || || |||||||| | | ||| ||||||||||| || || || | Sbjct 558892 CGGTGTTTTTCTTGAGCTCGAGGAACTCGAAGACATCCGAATGCCATGGCTCCAGGTAAA 558951 Query 76728 TCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTAT 76787 | || | | || || || || ||||||||||| | ||| | ||| ||| ||| Sbjct 558952 TAGCAAAGGCGCCAGGACGCTTGCCGCCTCCCTGATCCACATACCGTGCAACGTTGTTAA 559011 Query 76788 AAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTC 76847 | || |||| ||| |||| | || || || || ||||| || || |||| | | | Sbjct 559012 AGACCCTCAGCATGGGAACCAGACCATTGGAGGTGCCATTGGTGCCGCAAATCGAGGTGC 559071 Query 76848 CACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAG 76907 | ||| ||||| | | | || || || || |||||| ||| || || | | Sbjct 559072 CCTTTGCCCGAATGCAATGCACATTCAGTCCAATACCACCTGCCGATTTTGAAATCATGG 559131 Query 76908 CACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAA 76967 | || | | || | | | |||||||| || || || ||||| | | || | Sbjct 559132 CGCACTGCTCCACGGATTTGAAAATGCCCTCGATCGAGTCGGCCGTCATGGTCAAGAGGA 559191 Query 76968 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAG 77027 |||| ||||| || | || || | || ||| | || || || ||||||| Sbjct 559192 AACACGAAGACAACTGTGGGCGATTTGTGGCAGCGGCAAAAAGAGTTGGCGAGGCATGAG 559251 Query 77028 TGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGAT 77087 | || || || || | |||||||| ||||| | | | || || |||||| | | Sbjct 559252 TAAAGAATCGCTCGGACAAAAGATTGTAGGTTTCCACAGCAGCATCGATATCCTCTCCGT 559311 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147 | ||||| | || || |||||||||||||| || || || || | |||| || Sbjct 559312 GGATTCCAATTGCCACGCGCATCAACATATGTTGTGGGCGCTCAGCGATCTTTCCGTTCC 559371 Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 77207 | || | ||| |||||| ||| | || ||||||||||||||||| ||| |||||| | Sbjct 559372 TCTTAAGCAAATATGATCGTTCGAGGGTCTTAAAACCAAAATAGTTATATCCAAAGTCGC 559431 Query 77208 TTTCGTAAATAATAACCGAATTTAG 77232 || || || ||| || ||||| Sbjct 559432 GATCATAGATTATAGAGGAGTTTAG 559456 >seq5351 Length=991022 Score = 138 bits (152), Expect = 2e-27 Identities = 484/749 (65%), Gaps = 9/749 (1%) Strand=Plus/Plus Query 46330 ACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 46389 |||||||| |||||||| || || ||||||||||| || || ||||| |||| Sbjct 257258 ACTCCCATGCGCTGGTATTCGCCAACCTTCTTCTCGAAAAAGTTTGTCTTGCCGTCCAGC 257317 Query 46390 GATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAAT 46449 || || | ||||| || | ||| || || | || || || ||| || || || Sbjct 257318 GAAATCATCTCCATGAAGTTAAAGGGGTTCTTGGTGTTGTAGATCTTTCCAACGCCCAAC 257377 Query 46450 TCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATT 46509 || | || | || || ||||| || |||||| ||||| || |||||||| Sbjct 257378 TCCACCAGCAAACGGTCGGCCACGAACTCGATATACTGCGACATCAGATCGCAATTCATG 257437 Query 46510 CCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC- 46568 || || || || || || || || || || || ||||| || ||||| | || ||||| Sbjct 257438 CCGATAAGGTTCACTGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCATCG 257497 Query 46569 CG-ATATTATCGATGTTACTGTTTCCTCACTT-GGTGGATGCATCAAATGTTTAAACATT 46626 || || | || ||| | | | ||| ||| ||| | |||| | || | ||||| Sbjct 257498 CGAATGATTTCAATGATGCGCT---CTCGCTTGGGTCGCTGCACAAGGTGCTGGAACATC 257554 Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 | ||| ||||| ||||| || || || || || || | ||||| || || || Sbjct 257555 AGCACTGCGAAATCGCAATGCAGACCCTCGTCCCTTGAGATCAGCTCGTTGGAGAAGGTC 257614 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 || || ||||| || || ||||| || ||||| || || | ||||| || ||| Sbjct 257615 AGTCCCGGCATCAGGCCTCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAG 257674 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT--AT 46804 || |||||||| || || || || |||| | | ||| ||| | |||| || | Sbjct 257675 AAGATGCCTTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAGTTGGCTGACTTGGAG 257734 Query 46805 GA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 || ||||| ||||| |||||||| ||| || ||||| ||||| || || Sbjct 257735 GAGATCCAGGACATGGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTTTCGATGGCG 257794 Query 46864 TTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATAC 46923 || || || | | | | | ||| | ||||| || || | | ||| ||| Sbjct 257795 TTGAACAGGTACTCTCGCTGGTGCGGATCGCGGATGTATGTGTCGATCAGCACACTGTAC 257854 Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 46983 || || || || | ||| || || || ||||| || ||||| || || | || || || Sbjct 257855 ATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTGTG 257914 Query 46984 ATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCA 47043 ||||| ||||| | || || || || ||||||||| || || ||||| || Sbjct 257915 ATCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCATTGACAATGCCATCGGAGGCT 257974 Query 47044 GCAAAAAATGCCAATACATGTTTAATAAA 47072 || || || ||||| || || |||||| Sbjct 257975 GCGAAGAAGGCCAACACGTGCGAAATAAA 258003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712883122193280