Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4595 134 3e-26 seq5446 105 2e-17 seq5380 105 2e-17 seq5614 95.1 3e-14 >seq4595 Length=987418 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || |||||||||||||||| ||||| | |||||||| | Sbjct 267605 CAAG-TGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAAAGTGCGTCCATCTTCAA 267663 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | |||||| || | | ||||| ||||| ||||||| Sbjct 267664 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCTTGAA 267723 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| || ||| || || ||||| || || || | Sbjct 267724 TCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTGATGGTCTTTC 267783 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||||||||||| ||||||| Sbjct 267784 CGGTCAGGGTCTTCACGAAGATCTGCATT 267812 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | ||||||||| || ||||| |||||||| | | ||| | |||||| Sbjct 267827 GAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAATCAGACAGAGTGCGCCCATC 267886 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || ||||||||||| || | |||||| || | | ||||| ||||| || Sbjct 267887 TTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTC 267946 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || ||||| || ||| |||| | |||| || ||| || || ||||| || || Sbjct 267947 CTGGATTTTGGCCTTTACATTCTCGATAGTGTCCGATGGCTCCACCTCCAGAGTGATGGT 268006 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||||||||||| |||||| Sbjct 268007 CTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 268039 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || | ||||||||| || |||||||||||||||| ||||| | Sbjct 267365 GAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAATCGGACAAAGTGCG 267424 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||| || | | |||||| || | | |||||| || Sbjct 267425 ACCGTCCTCCAGTTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGGATTCCCTC 267484 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || ||||| || || |||| | |||| || |||||| || ||||| Sbjct 267485 CTTGTCCTGGATTTTGGCCTTCACGTTCTCAATAGTGTCCGACGGCTCTACCTCCAGAGT 267544 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || ||||||||||||| |||||| Sbjct 267545 GATGGTTTTTCCGGTAAGGGTCTTCACGAAGATCTGCAT 267583 Score = 116 bits (128), Expect = 9e-21 Identities = 153/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| |||| ||||| | || || || | Sbjct 268517 CAAG-TGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACCGTCCTCAA 268575 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| || | |||||| || | | ||||| ||||| || |||| Sbjct 268576 GCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAA 268635 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| |||| | | || || ||| || || || ||||| ||||| | Sbjct 268636 TTTTGGCTTTCACATTCTCGATCGTATCGGAGGGCTCAACCTCCAGGGTAATGGTTTTTC 268695 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | |||||||| |||| ||||||||| Sbjct 268696 CAGTCAAGGTCTTCACAAAGATCTGCATTTT 268726 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || ||||||||||| |||| ||||| | |||||||| | Sbjct 268061 CAAG-TGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGTCCATCTTCAA 268119 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| ||||| || | |||||| || | | ||||| ||||| || || | Sbjct 268120 GCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGA 268179 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||| |||| | | |||| || ||| || || ||||| || || || | Sbjct 268180 TTTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTGATGGTCTTTC 268239 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||||| |||||| Sbjct 268240 CGGTCAGGGTCTTCACGAAGATCTGCAT 268267 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || ||||||||||| |||| ||||| | || || || | Sbjct 268289 CAAG-TGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAAGTACGACCGTCCTCAA 268347 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || |||||||| || || | |||||| || | | ||||| ||||| ||||||| Sbjct 268348 GCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCTTGAA 268407 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| || ||| || || ||||| || || || | Sbjct 268408 TCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTCCACCTCCAGAGTGATGGTCTTTC 268467 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||||||||||| |||||| Sbjct 268468 CGGTGAGGGTCTTCACGAAGATCTGCAT 268495 >seq5446 Length=1541693 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| |||| | || | ||||| || | Sbjct 1371112 CAAG-TGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCCA 1371170 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||||||||| || | |||||| || | | |||||| ||||| || |||| Sbjct 1371171 GCTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAA 1371230 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| ||| || || || | ||||| || |||| Sbjct 1371231 TCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGTTCCACCTCCAAGGTAATGGTCTTGC 1371290 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || ||||||| ||||| Sbjct 1371291 CGGTAAGGGTTTTAACGAAGATTTGCAT 1371318 >seq5380 Length=870010 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| || | || | ||| ||||| || || ||||| ||||| | | || | Sbjct 656799 AGTCGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGAGAGGGTGCGA 656740 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || |||||||| || | |||||| || | | |||||||| Sbjct 656739 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 656680 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || ||||| || ||||||| | || | | || || || || ||||| || Sbjct 656679 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGGGTG 656620 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||||||||| ||||| ||||||| |||||| || Sbjct 656619 ATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 656579 >seq5614 Length=3457230 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | ||||||||| |||||||||||||| |||| | ||| | || || Sbjct 1201140 AGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCC 1201081 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | | ||||||||| | | || || ||||| || Sbjct 1201080 TCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCC 1201021 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| |||| | | | || || ||| || || | || || || Sbjct 1201020 TGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTC 1200961 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| || |||| |||||| Sbjct 1200960 TTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200929 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | ||||||||| |||||||||||||| || | | ||| | || || Sbjct 1200912 AGGACCAAATGCAAAGTAGACTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTCC 1200853 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | | ||||||||| | | || || ||||| || Sbjct 1200852 TCAAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCC 1200793 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| |||| | | | || || ||| || || | || || || Sbjct 1200792 TGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTC 1200733 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| || |||| |||||| Sbjct 1200732 TTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1200701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153735736724934