Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1878 89.7 6e-13 seq1670 82.4 9e-11 >seq1878 Length=2485 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 157427 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGCC 157486 |||||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 1115 TAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCTGGTTCGAATCCAGCA 1174 Query 157487 TGAGACGCCAGT 157498 | ||||||| Sbjct 1175 GGGCGCGCCAGT 1186 >seq1670 Length=11252 Score = 82.4 bits (90), Expect = 9e-11 Identities = 70/86 (81%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 17704 TGGGGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCAA 17763 || || ||||||||||| |||||||||||| ||||||||||| ||| |||| |||||| | Sbjct 6166 TGCGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGA 6225 Query 17764 GTCCCTTCAGTCCCGTATGCCACttt 17789 | ||| ||| || | |||||||| Sbjct 6226 GCCCCGTCACTCGC----GCCACTTT 6247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596264310604640