Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4595 147 2e-30 seq5446 143 2e-29 seq5380 127 1e-24 seq5614 125 5e-24 >seq4595 Length=987418 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | ||| |||| ||| || || |||||| |||||||||||||| Sbjct 267581 CATGCCACCACGGAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAATC 267640 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | ||| | || || |||||||| ||||| ||||||| |||||||||||||| Sbjct 267641 GGACAAAGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 267700 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || ||||| || ||||| ||||| | | |||||||| | | || Sbjct 267701 AGGAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTC 267760 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || |||||||| || ||||||||||||||||| ||||| Sbjct 267761 CACCTCCAGAGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 267811 Score = 143 bits (158), Expect = 2e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | ||| |||| ||| || || ||||| ||||||||||| || Sbjct 268037 CATGCCACCACGGAGACGCAAGACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTC 268096 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | ||| | || || |||||||| ||||||||||||| |||||||||||||| Sbjct 268097 GGACAAAGTGCGTCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGG 268156 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || ||||| ||| || || ||||| | | |||||||| | | || Sbjct 268157 AGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTC 268216 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| || || |||||||| || ||||||||||||||||| |||||| Sbjct 268217 CACCTCCAGAGTGATGGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCATG 268268 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | ||| |||| ||| || || ||||| ||||||||||| || Sbjct 268265 CATGCCACCACGGAGACGCAAGACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTC 268324 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | || |||| || |||||||| ||||| || |||| |||||||||||||| Sbjct 268325 GGACAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGG 268384 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || ||||| || ||||| ||||| | | |||||||| | | || Sbjct 268385 AGGAATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGATGGCTC 268444 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || |||||||| |||||||||||||||||||| ||||| Sbjct 268445 CACCTCCAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 268495 Score = 136 bits (150), Expect = 3e-27 Identities = 159/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | || |||||| |||||||||||||||| | ||| |||| || Sbjct 267374 CACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAATCGGACAAAGTGCGACCGTCCTC 267433 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||| ||||| ||||| || ||||||||||||||||||| ||| | || ||||| ||| Sbjct 267434 CAGTTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTG 267493 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || |||| | |||| | || ||||| | | || ||||||| || || || | Sbjct 267494 GATTTTGGCCTTC-ACGTTCTCAATAGTGTCCGACGGCTCTACCTCCAGAGTGATGGTTT 267552 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| || ||||||||||||||||| |||||| Sbjct 267553 TTCCGGTAAGGGTCTTCACGAAGATCTGCATG 267584 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | | ||||| || | || |||||| ||||| |||||||| Sbjct 267809 CATTCCTCCGCGCAGACGGAGCACCAAATGCAAAGTAGACTCCTTCTGGATATTGTAATC 267868 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || || |||||||| ||||| ||||||| |||||||||||||| Sbjct 267869 AGACAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 267928 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || ||||| ||| || || ||| | | | || ||||| | | || Sbjct 267929 AGGAATTCCCTCCTTGTCCTGGATTTTGGCCTTTACATTCTCGATAGTGTCCGATGGCTC 267988 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| || || |||||||| || ||||||||||||||||| |||||| Sbjct 267989 CACCTCCAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCATG 268040 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | ||| |||| ||| || || |||||| ||||||||||| || Sbjct 268493 CATACCACCACGGAGACGCAAGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTC 268552 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | || |||| || |||||||| ||||| ||||||| |||||||||||||| Sbjct 268553 GGACAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 268612 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | || ||||| ||| | | || |||| | ||| | || || |||| || | Sbjct 268613 AGGAATTCCCTCCTTGTCC-TGAATTTTGGCTTTCACATTCTCGATCGTATCGGAGGGCT 268671 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| ||||| || ||||| || | ||||||||| ||||| ||||| Sbjct 268672 CAACCTCCAGGGTAATGGTTTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 268723 >seq5446 Length=1541693 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||| ||||||||||| |||| || ||| | || || Sbjct 1371109 CACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTC 1371168 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||| || ||||| ||||| | |||||||||||||| || | || ||||| ||| Sbjct 1371169 CAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTG 1371228 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | |||||||| | | ||||||||||| ||||| ||||| Sbjct 1371229 AATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGTTCCACCTCCAAGGTAATGGTCTT 1371288 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || ||||| || ||||||||||||||| || Sbjct 1371289 GCCGGTAAGGGTTTTAACGAAGATTTGCATGGTG 1371322 >seq5380 Length=870010 Score = 127 bits (140), Expect = 1e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||| | ||||| ||| | ||| |||||| || ||||| ||||| | ||| ||| Sbjct 656799 AGTCGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAATCAGAGAGGGTGCGA 656740 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || || ||||||| |||||||||||||| ||| | ||||| Sbjct 656739 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 656680 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299 || ||| ||||| || | || | || || || | | ||| ||||| | || Sbjct 656679 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGGGTG 656620 Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| |||||||||||||| |||||||| ||||| Sbjct 656619 ATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 656582 >seq5614 Length=3457230 Score = 125 bits (138), Expect = 5e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||||||||||||||| || | || ||| |||| || |||||||| || ||||| Sbjct 1200664 CTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAA 1200605 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| |||||||| |||| || | ||| ||||| ||| ||||| || | | || Sbjct 1200604 GATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTT-GGCCTTGACGT 1200546 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | ||||| |||| || ||| ||||||| || || ||||| || || | ||||| | Sbjct 1200545 TCTCAATGGTATCGGAGGGTTCGACCTCCAAGGTGATGGTCTTGCCGGTTAAAGTCTTGA 1200486 Query 44325 CGAAGATTTGCAT 44337 | ||||| ||||| Sbjct 1200485 CAAAGATCTGCAT 1200473 Score = 122 bits (134), Expect = 6e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||||||||||||||| |||| || ||| |||| || |||||||| || ||||| Sbjct 1201120 CTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAA 1201061 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| |||||||| |||| || | ||| ||||| ||| ||||| ||| | | Sbjct 1201060 GATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 1201001 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||| |||| || || ||||||| || || ||||| || || | ||||| || Sbjct 1201000 CTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGAC 1200941 Query 44326 GAAGATTTGCAT 44337 ||||| ||||| Sbjct 1200940 AAAGATCTGCAT 1200929 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||||||||||||||| || | || ||| |||| || |||||||| || ||||| Sbjct 1200892 CTCCTTTTGGATGTTGTAGTCCGACAGAGTGCGTCCGTCCTCAAGCTGCTTGCCAGCAAA 1200833 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| |||||||| |||| || | ||| ||||| ||| ||||| ||| | | Sbjct 1200832 GATCAATCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 1200773 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||| |||| || || ||||||| || || ||||| || || | ||||| || Sbjct 1200772 CTCAATGGTATCGGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGAC 1200713 Query 44326 GAAGATTTGCAT 44337 ||||| ||||| Sbjct 1200712 AAAGATCTGCAT 1200701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359965154998218