Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20ficusphila_20[refseq_20GCF_5F000220665.1_202013-03-04] 5,754 sequences; 152,439,475 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4595 156 1e-32 seq5446 150 4e-31 seq5380 150 4e-31 seq5614 123 6e-23 >seq4595 Length=987418 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || ||||| || ||||| || |||||||| || ||| Sbjct 267808 CAGATCTTCGTGAAGACCCTGACCGGAAAGACCATCACTCTGGAGGTGGAGCCATCGGAC 267749 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || |||||||| || || || ||||| ||||| || ||||| Sbjct 267748 ACCATCGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAGCAG 267689 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| ||||||||| | ||| | ||||||| ||| || Sbjct 267688 CGTCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGCACTTTGTCCGATTACAACATC 267629 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || ||||| || || | || ||| | ||| Sbjct 267628 CAGAAGGAGTCAACCCTCCACTTGGTCTTGCGTCTC 267593 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || ||||| || ||||| || |||||||| || ||| Sbjct 268264 CAGATCTTCGTGAAGACCCTGACCGGAAAGACCATCACTCTGGAGGTGGAGCCATCGGAC 268205 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || || || |||||||| || ||||| ||||| || ||||| Sbjct 268204 ACCATCGAGAATGTGAAGGCCAAAATCCAGGACAAGGAGGGAATTCCTCCAGATCAGCAG 268145 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| ||||||||| | ||| | |||| || ||| || Sbjct 268144 CGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGCACTTTGTCCGACTACAACATC 268085 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || ||||| || || || | || ||| | ||| Sbjct 268084 CAGAAGGAATCGACCCTCCACTTGGTCTTGCGTCTC 268049 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| ||||| || ||||| || |||||||| || ||| Sbjct 268492 CAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACTCTGGAGGTGGAGCCATCGGAC 268433 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || |||||||| || || || ||||| ||||| || ||||| Sbjct 268432 ACCATCGAGAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAGCAG 268373 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || ||||| || || || | ||| | |||| || ||| || Sbjct 268372 CGTCTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGTCCGACTACAACATC 268313 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || |||||||| || || | || ||| | ||| Sbjct 268312 CAGAAGGAATCAACCCTCCACTTGGTCTTGCGTCTC 268277 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || ||||| || ||||| || |||||||| || ||| Sbjct 268036 CAGATCTTCGTGAAGACCCTGACTGGAAAGACCATCACTCTGGAGGTGGAGCCATCGGAC 267977 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || || || |||||||| || ||||| ||||| || ||||| Sbjct 267976 ACTATCGAGAATGTAAAGGCCAAAATCCAGGACAAGGAGGGAATTCCTCCAGATCAGCAG 267917 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| |||||||| | ||||| | ||||| || || Sbjct 267916 CGTCTGATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTGTCTGATTACAATATC 267857 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || ||||| Sbjct 267856 CAGAAGGAGTCTACTTTGCAT 267836 Score = 134 bits (148), Expect = 3e-26 Identities = 165/225 (73%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || | || |||||||| || ||||| ||||| || Sbjct 268726 AAAATGC---AGATCTTTGTGAAGACCTTGACTGGAAAAACCATTACCCTGGAGGTTGAG 268670 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || || |||||||| || ||| || ||||||||||| || ||||| ||||| Sbjct 268669 CCCTCCGATACGATCGAGAATGTGAAAGCCAAAATTCAGGACAAGGAGGGAATTCCTCCA 268610 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || ||||||||||| || ||||| || || || | ||| | |||| Sbjct 268609 GATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGTCCGAC 268550 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || ||| |||| || || ||||| || || | || ||| | ||| Sbjct 268549 TACAACATCCAGAAGGAGTCAACCCTCCACTTGGTCTTGCGTCTC 268505 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || |||||||| ||||| || ||||| || || ||| Sbjct 267580 CAGATCTTCGTGAAGACCCTTACCGGAAAAACCATCACTCTGGAGGTAGAGCCGTCGGAC 267521 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || || || |||||||| || ||||||||||| || ||||| Sbjct 267520 ACTATTGAGAACGTGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCTCCAGATCAGCAG 267461 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| || || || || || || | ||| | ||||||| ||| || Sbjct 267460 CGTTTGATTTTCGCCGGCAAGCAACTGGAGGACGGTCGCACTTTGTCCGATTACAACATC 267401 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 267400 CAGAAGGAGTCTACTTTGCA-CTTG 267377 >seq5446 Length=1541693 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || || || || || ||| | ||||||||| || ||| Sbjct 1371315 CAAATCTTCGTTAAAACCCTTACCGGCAAGACCATTACCTTGGAGGTGGAACCTTCGGAC 1371256 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||||||||| || || |||||||| || || ||||| Sbjct 1371255 ACCATCGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAGCAG 1371196 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| |||||||| || |||||| | || || |||| || ||| || Sbjct 1371195 CGTCTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACCCTGTCCGACTACAACATC 1371136 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 1371135 CAGAAGGAGTCGACCCTCCA-CTTG 1371112 >seq5380 Length=870010 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| ||||| ||| || || Sbjct 656585 CAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAACCGTCGGAT 656644 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||||||||||||||||||||| ||||| || ||||| Sbjct 656645 ACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAG 656704 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| |||||||| | || || | ||||||||| | Sbjct 656705 CGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGATTATAACATT 656764 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 656765 CAGAAGGAGTCCACTTTGCA-CTTG 656788 >seq5614 Length=3457230 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || || || |||||| | ||||| ||| ||| || Sbjct 1200476 CAGATCTTTGTCAAGACTTTAACCGGCAAGACCATCACCTTGGAGGTCGAACCCTCCGAT 1200535 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| || || || || || |||||||| Sbjct 1200536 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAG 1200595 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || || ||||| || || ||| | ||||| | || || ||| || Sbjct 1200596 CGATTGATCTTTGCTGGCAAGCAGCTTGAGGACGGACGCACTCTGTCGGACTACAACATC 1200655 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| || || || ||||| Sbjct 1200656 CAAAAGGAGTCTACTTTGCAT 1200676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203642457174276