Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq17439 136 4e-27 >seq17439 Length=18325388 Score = 136 bits (150), Expect = 4e-27 Identities = 466/724 (64%), Gaps = 12/724 (2%) Strand=Plus/Plus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || || ||||| || ||||| || || | || || | ||||||||| ||| ||||| Sbjct 9056320 TTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCCATGAAAGTAAATGGATTC 9056379 Query 16754 GTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCT 16813 | | | |||||||| | || || || | | || | ||| || || || || Sbjct 9056380 TTTGTGTTATATATTTTACCGACACCGAGCTCCACCAACAAGCGATCGGCCACGAACTCA 9056439 Query 16814 ATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTC 16873 ||||||| | |||| | | || ||||| || || ||| ||| || | ||| || || Sbjct 9056440 ATATATTCGGACATCAGCGCACAATTCATGCCAATCAGATTTACAGGCAAAGCGTCAGTG 9056499 Query 16874 AAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTC----CTC 16929 | ||| ||||| ||| || || ||| | || | | ||||| || Sbjct 9056500 AGAAACTCCTGCTCAATAGTCACAGCATCCGAGACGATCTCAATGATGCGTTCACGGCTG 9056559 Query 16930 GGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTC 16989 ||||| || | || || | ||||||| | || || |||||||| | ||||| Sbjct 9056560 GGACGCTGCACC----AGGTGCTGGAACATCATAACCGCAAAGTCGCAATGCAGCCCCTC 9056615 Query 16990 GTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAA 17049 || | | ||| || ||||| || || |||| |||||||| || || || || | Sbjct 9056616 ATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCATTAGGCCACGCTTTTTAAG 9056675 Query 17050 CCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGAT 17109 ||| || || | ||| || || |||||| || || ||||||| || || || || Sbjct 9056676 CCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTTCGACGGCAGCGAAGGCAAT 9056735 Query 17110 TAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTT 17169 | || || | | | || | ||| |||||| || |||| || || || Sbjct 9056736 AATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAAATCCAAGAGAGCGCCCAGTCCGCCTT 9056795 Query 17170 TTGCTTTATGCAATC--CATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGG 17227 |||||| || | ||| ||||| || || || || | | || | || | Sbjct 9056796 ACGCTTTA--CAGCCGGCATTGTTTCAATAGCATTGAAGAGATAATCGCGCTGATGAGGA 9056853 Query 17228 TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCT 17287 || ||||| || ||||| || | |||||||| || ||||||| ||||||||||| Sbjct 9056854 TCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGAGTGTACATTCTCCATGGCA 9056913 Query 17288 ATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC 17347 |||||||| || || ||||| || || || | || || |||||| | || || || Sbjct 9056914 ATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTTCCTGGCTAAAGCGCTCA 9056973 Query 17348 GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATG 17407 | ||||| ||||| || ||||| ||| |||||||| || ||||| | ||| |||| Sbjct 9056974 ACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAGCCAACACATGTGAAATG 9057033 Query 17408 AAAT 17411 |||| Sbjct 9057034 AAAT 9057037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517432775059200