Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq17439 136 4e-27
>seq17439
Length=18325388
Score = 136 bits (150), Expect = 4e-27
Identities = 466/724 (64%), Gaps = 12/724 (2%)
Strand=Plus/Plus
Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753
|| || ||||| || ||||| || || | || || | ||||||||| ||| |||||
Sbjct 9056320 TTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCCATGAAAGTAAATGGATTC 9056379
Query 16754 GTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCT 16813
| | | |||||||| | || || || | | || | ||| || || || ||
Sbjct 9056380 TTTGTGTTATATATTTTACCGACACCGAGCTCCACCAACAAGCGATCGGCCACGAACTCA 9056439
Query 16814 ATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTC 16873
||||||| | |||| | | || ||||| || || ||| ||| || | ||| || ||
Sbjct 9056440 ATATATTCGGACATCAGCGCACAATTCATGCCAATCAGATTTACAGGCAAAGCGTCAGTG 9056499
Query 16874 AAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTC----CTC 16929
| ||| ||||| ||| || || ||| | || | | ||||| ||
Sbjct 9056500 AGAAACTCCTGCTCAATAGTCACAGCATCCGAGACGATCTCAATGATGCGTTCACGGCTG 9056559
Query 16930 GGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTC 16989
||||| || | || || | ||||||| | || || |||||||| | |||||
Sbjct 9056560 GGACGCTGCACC----AGGTGCTGGAACATCATAACCGCAAAGTCGCAATGCAGCCCCTC 9056615
Query 16990 GTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAA 17049
|| | | ||| || ||||| || || |||| |||||||| || || || || |
Sbjct 9056616 ATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCATTAGGCCACGCTTTTTAAG 9056675
Query 17050 CCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGAT 17109
||| || || | ||| || || |||||| || || ||||||| || || || ||
Sbjct 9056676 CCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTTCGACGGCAGCGAAGGCAAT 9056735
Query 17110 TAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTT 17169
| || || | | | || | ||| |||||| || |||| || || ||
Sbjct 9056736 AATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAAATCCAAGAGAGCGCCCAGTCCGCCTT 9056795
Query 17170 TTGCTTTATGCAATC--CATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGG 17227
|||||| || | ||| ||||| || || || || | | || | || |
Sbjct 9056796 ACGCTTTA--CAGCCGGCATTGTTTCAATAGCATTGAAGAGATAATCGCGCTGATGAGGA 9056853
Query 17228 TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCT 17287
|| ||||| || ||||| || | |||||||| || ||||||| |||||||||||
Sbjct 9056854 TCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGAGTGTACATTCTCCATGGCA 9056913
Query 17288 ATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC 17347
|||||||| || || ||||| || || || | || || |||||| | || || ||
Sbjct 9056914 ATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTTCCTGGCTAAAGCGCTCA 9056973
Query 17348 GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATG 17407
| ||||| ||||| || ||||| ||| |||||||| || ||||| | ||| ||||
Sbjct 9056974 ACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAGCCAACACATGTGAAATG 9057033
Query 17408 AAAT 17411
||||
Sbjct 9057034 AAAT 9057037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517432775059200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |