Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq17439 127 2e-24 >seq17439 Length=18325388 Score = 127 bits (140), Expect = 2e-24 Identities = 310/468 (66%), Gaps = 4/468 (1%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| | ||||| | | ||| ||||||||||| || || || || | | ||| || Sbjct 9056572 AGGTGCTGGAACATCATAACCGCAAAGTCGCAATGCAGCCCCTCATCACGGGAGATGAGC 9056631 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 ||||| || ||||| | || |||||| || || || || | |||||| || | ||| Sbjct 9056632 TCGTTTGAGAAAGTCAGACCGGGCATTAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCA 9056691 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || || |||||| || || || || | || || || || | || ||| | | Sbjct 9056692 AAACTGCCGCTAAAGAAGATGCCTTCGACGGCAGCGAAGGCAATAATGCGCTCCCCAAAG 9056751 Query 16364 GTAGCATCTTT--ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAAT 16421 | ||| | || || | |||||| | |||| || || || | |||| | Sbjct 9056752 TTGGCAGCCTTGGATGA--AATCCAAGAGAGCGCCCAGTCCGCCTTACGCTTTACAGCCG 9056809 Query 16422 CCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTAT 16481 ||| ||||| || || || || | | || | ||| ||| ||||| || | Sbjct 9056810 GCATTGTTTCAATAGCATTGAAGAGATAATCGCGCTGATGAGGATCTCGGATATAAGTGT 9056869 Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541 | || || | ||||||||| |||||||||| ||||| ||||| |||||||| ||||||| Sbjct 9056870 CGATTAGCACACTGTACATCTCTGAGTGTACATTCTCCATGGCAATCTGAAAACCATAGA 9056929 Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601 |||| || ||||| | || || |||||| | ||| || || |||| ||||| || | Sbjct 9056930 AGCAGCGCGCCTCTGTAATCTGCACTTCCTGGCTAAAGCGCTCAACCAGATTCTCGTTAA 9056989 Query 16602 CGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAAT 16649 | || || || || || || || ||||| | || |||||||| Sbjct 9056990 CAATGCCATCGGAGGCGGCGAAGAAAGCCAACACATGTGAAATGAAAT 9057037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511302911660800