Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_001416.1
Length=48502
Score E
Sequences producing significant alignments: (Bits) Value
seq11536 1842 0.0
>seq11536
Length=2982
Score = 1842 bits (2042), Expect = 0.0
Identities = 1025/1026 (99%), Gaps = 1/1026 (0%)
Strand=Plus/Plus
Query 16198 GTGAGCCGTAATTATCATCTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCG 16257
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1958 GTGAGCCGTA-TTATCATCTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCG 2016
Query 16258 CAGACGCGGCAATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAAC 16317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2017 CAGACGCGGCAATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAAC 2076
Query 16318 ATGGCCTGGTGTCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTT 16377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2077 ATGGCCTGGTGTCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTT 2136
Query 16378 GGTGCGGCGGATGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCA 16437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2137 GGTGCGGCGGATGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCA 2196
Query 16438 GTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACA 16497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2197 GTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACA 2256
Query 16498 CAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGTA 16557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2257 CAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGTA 2316
Query 16558 TGGAACGGGCAGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTAT 16617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2317 TGGAACGGGCAGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTAT 2376
Query 16618 AACCGCAGTAATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCC 16677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2377 AACCGCAGTAATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCC 2436
Query 16678 CTGAAGGACCGCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAG 16737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2437 CTGAAGGACCGCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAG 2496
Query 16738 ACGGCGACAGAGCTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACG 16797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2497 ACGGCGACAGAGCTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACG 2556
Query 16798 AAGATGGATGCCTTTGGCTGTACCAGCCGGGGGCAGGCACACCGCGCCGGGCTGTGGCTG 16857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2557 AAGATGGATGCCTTTGGCTGTACCAGCCGGGGGCAGGCACACCGCGCCGGGCTGTGGCTG 2616
Query 16858 ATTAAAACAGAACTGCTGGAAACGCAGACCGTGGATTTCAGCGTCGGCGCAGAAGGGCTT 16917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2617 ATTAAAACAGAACTGCTGGAAACGCAGACCGTGGATTTCAGCGTCGGCGCAGAAGGGCTT 2676
Query 16918 CGCCATGTACCGGGCGATGTTATTGAAATCTGCGATGATGACTATGCCGGTATCAGCACC 16977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2677 CGCCATGTACCGGGCGATGTTATTGAAATCTGCGATGATGACTATGCCGGTATCAGCACC 2736
Query 16978 GGTGGTCGTGTGCTGGCGGTGAACAGCCAGACCCGGACGCTGACGCTCGACCGTGAAATC 17037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2737 GGTGGTCGTGTGCTGGCGGTGAACAGCCAGACCCGGACGCTGACGCTCGACCGTGAAATC 2796
Query 17038 ACGCTGCCATCCTCCGGTACCGCGCTGATAAGCCTGGTTGACGGAAGTGGCAATCCGGTC 17097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2797 ACGCTGCCATCCTCCGGTACCGCGCTGATAAGCCTGGTTGACGGAAGTGGCAATCCGGTC 2856
Query 17098 AGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTGAGCCGTGTTCCTGAC 17157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2857 AGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTGAGCCGTGTTCCTGAC 2916
Query 17158 GGTGTTGCTGAATACAGCGTATGGGAGCTGAAGCTGCCGACGCTGCGCCAGCGACTGTTC 17217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2917 GGTGTTGCTGAATACAGCGTATGGGAGCTGAAGCTGCCGACGCTGCGCCAGCGACTGTTC 2976
Query 17218 CGCTGC 17223
||||||
Sbjct 2977 CGCTGC 2982
Score = 1056 bits (1170), Expect = 0.0
Identities = 616/634 (97%), Gaps = 2/634 (0%)
Strand=Plus/Plus
Query 16210 TATCATCT-GCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCA 16268
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATCATCTCGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCA 60
Query 16269 ATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTG 16328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTG 120
Query 16329 TCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 16388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 180
Query 16389 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 16448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 240
Query 16449 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGC 16508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGC 300
Query 16509 GTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCC-GGTATGGAACGGGC 16567
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGGTATGGAACGGGC 360
Query 16568 AGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTATAACCGCAGTA 16627
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 361 AGACGCTGACGTTCGTGCATGACCGACCGTCGGATAAGACGTGGACCTATAACCTCTTTA 420
Query 16628 ATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCCCTGAAGGACC 16687
||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| ||||
Sbjct 421 ATGTGATGATGCCGGATGATGGCGCGCCTTTCCGCTACAGCTTCTTCGCCCTGAATGACC 480
Query 16688 GCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAGACGGCGACAG 16747
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 481 GCCATAATGCCGTTGAGGTGAACTGGATTGACCCAAACAACGGCTGGGAGACTGCGACAG 540
Query 16748 AGCTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACGAAGATGGATG 16807
||||||||||| ||||||| ||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 541 AGCTTGTTGAATATACGCATGCCATTGCCTGTTACAGTCGTAATGTTACTAAGATGGATG 600
Query 16808 CCTTTGGCTGTACCAGCCGGGGGCAGGCACACCG 16841
||||||||||||||||||||||||||||||||||
Sbjct 601 CCTTTGGCTGTACCAGCCGGGGGCAGGCACACCG 634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 155052681937920
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