Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq11536 1842 0.0 >seq11536 Length=2982 Score = 1842 bits (2042), Expect = 0.0 Identities = 1025/1026 (99%), Gaps = 1/1026 (0%) Strand=Plus/Plus Query 16198 GTGAGCCGTAATTATCATCTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCG 16257 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1958 GTGAGCCGTA-TTATCATCTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCG 2016 Query 16258 CAGACGCGGCAATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAAC 16317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2017 CAGACGCGGCAATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAAC 2076 Query 16318 ATGGCCTGGTGTCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTT 16377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2077 ATGGCCTGGTGTCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTT 2136 Query 16378 GGTGCGGCGGATGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCA 16437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2137 GGTGCGGCGGATGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCA 2196 Query 16438 GTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACA 16497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2197 GTGCCGGACGGCTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACA 2256 Query 16498 CAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGTA 16557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2257 CAGCGTAAGGCGTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGTA 2316 Query 16558 TGGAACGGGCAGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTAT 16617 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2317 TGGAACGGGCAGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTAT 2376 Query 16618 AACCGCAGTAATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCC 16677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2377 AACCGCAGTAATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCC 2436 Query 16678 CTGAAGGACCGCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAG 16737 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2437 CTGAAGGACCGCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAG 2496 Query 16738 ACGGCGACAGAGCTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACG 16797 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2497 ACGGCGACAGAGCTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACG 2556 Query 16798 AAGATGGATGCCTTTGGCTGTACCAGCCGGGGGCAGGCACACCGCGCCGGGCTGTGGCTG 16857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2557 AAGATGGATGCCTTTGGCTGTACCAGCCGGGGGCAGGCACACCGCGCCGGGCTGTGGCTG 2616 Query 16858 ATTAAAACAGAACTGCTGGAAACGCAGACCGTGGATTTCAGCGTCGGCGCAGAAGGGCTT 16917 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2617 ATTAAAACAGAACTGCTGGAAACGCAGACCGTGGATTTCAGCGTCGGCGCAGAAGGGCTT 2676 Query 16918 CGCCATGTACCGGGCGATGTTATTGAAATCTGCGATGATGACTATGCCGGTATCAGCACC 16977 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2677 CGCCATGTACCGGGCGATGTTATTGAAATCTGCGATGATGACTATGCCGGTATCAGCACC 2736 Query 16978 GGTGGTCGTGTGCTGGCGGTGAACAGCCAGACCCGGACGCTGACGCTCGACCGTGAAATC 17037 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2737 GGTGGTCGTGTGCTGGCGGTGAACAGCCAGACCCGGACGCTGACGCTCGACCGTGAAATC 2796 Query 17038 ACGCTGCCATCCTCCGGTACCGCGCTGATAAGCCTGGTTGACGGAAGTGGCAATCCGGTC 17097 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2797 ACGCTGCCATCCTCCGGTACCGCGCTGATAAGCCTGGTTGACGGAAGTGGCAATCCGGTC 2856 Query 17098 AGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTGAGCCGTGTTCCTGAC 17157 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2857 AGCGTGGAGGTTCAGTCCGTCACCGACGGCGTGAAGGTAAAAGTGAGCCGTGTTCCTGAC 2916 Query 17158 GGTGTTGCTGAATACAGCGTATGGGAGCTGAAGCTGCCGACGCTGCGCCAGCGACTGTTC 17217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2917 GGTGTTGCTGAATACAGCGTATGGGAGCTGAAGCTGCCGACGCTGCGCCAGCGACTGTTC 2976 Query 17218 CGCTGC 17223 |||||| Sbjct 2977 CGCTGC 2982 Score = 1056 bits (1170), Expect = 0.0 Identities = 616/634 (97%), Gaps = 2/634 (0%) Strand=Plus/Plus Query 16210 TATCATCT-GCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCA 16268 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TATCATCTCGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCA 60 Query 16269 ATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTG 16328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATACAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTG 120 Query 16329 TCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 16388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCTGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 180 Query 16389 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 16448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 240 Query 16449 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGC 16508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTGACCACACAGCGTAAGGC 300 Query 16509 GTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCC-GGTATGGAACGGGC 16567 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 301 GTGGGATGTGCTCAGCGATTTCTGCTCGGCGATGCGCTGTATGCCGGGTATGGAACGGGC 360 Query 16568 AGACGCTGACGTTCGTGCAGGACCGACCGTCGGATAAGACGTGGACCTATAACCGCAGTA 16627 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| | || Sbjct 361 AGACGCTGACGTTCGTGCATGACCGACCGTCGGATAAGACGTGGACCTATAACCTCTTTA 420 Query 16628 ATGTGGTGATGCCGGATGATGGCGCGCCGTTCCGCTACAGCTTCAGCGCCCTGAAGGACC 16687 ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| |||| Sbjct 421 ATGTGATGATGCCGGATGATGGCGCGCCTTTCCGCTACAGCTTCTTCGCCCTGAATGACC 480 Query 16688 GCCATAATGCCGTTGAGGTGAACTGGATTGACCCGAACAACGGCTGGGAGACGGCGACAG 16747 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 481 GCCATAATGCCGTTGAGGTGAACTGGATTGACCCAAACAACGGCTGGGAGACTGCGACAG 540 Query 16748 AGCTTGTTGAAGATACGCAGGCCATTGCCCGTTACGGTCGTAATGTTACGAAGATGGATG 16807 ||||||||||| ||||||| ||||||||| ||||| ||||||||||||| |||||||||| Sbjct 541 AGCTTGTTGAATATACGCATGCCATTGCCTGTTACAGTCGTAATGTTACTAAGATGGATG 600 Query 16808 CCTTTGGCTGTACCAGCCGGGGGCAGGCACACCG 16841 |||||||||||||||||||||||||||||||||| Sbjct 601 CCTTTGGCTGTACCAGCCGGGGGCAGGCACACCG 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155052681937920