Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq17434 432 4e-116 seq17439 242 4e-59 >seq17434 Length=8399593 Score = 432 bits (478), Expect = 4e-116 Identities = 1222/1863 (66%), Gaps = 32/1863 (2%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||| || |||| | | || || ||||| || ||||| ||||||||||| || ||| Sbjct 1622251 GTGAACTGTATGGCATTTGCAGCCGGCTTCGTGCGAAGATAATACATTCCCGTCTTAAGA 1622310 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 ||| |||| ||||||||| || ||| |||||| ||| | || || || | | Sbjct 1622311 CCGGCTTTCCACGAGTAAAAATGGATCGATGTCAGTTTGCCATAGTTGGGCTCAGCCACA 1622370 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || || || | || ||||||||||| ||||| || || | || || |||||||| || Sbjct 1622371 TGTATGTTGAACGACTGACTTTGATCAATGAATGCCCCGCGATCGGCTGCCATTTTGATC 1622430 Query 52988 ATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 53046 | || ||| ||| |||||||| | || ||||| | | | | || || ||| | Sbjct 1622431 GTTGT-TTTCACGGATATTTCCCACACGGTCTTATACAGATCCCTCACATTTTTTGGTAT 1622489 Query 53047 G--TTTG-TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 | || | | || || || ||||| | | | || || |||||| || ||||||| Sbjct 1622490 GGATTCGATGTTTTGTATTGATCCTCGACTGGCGATTATTTGATTCTTCATATCATCATC 1622549 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||| || | ||| |||||| | | | | ||| |||| || || || || || || Sbjct 1622550 CCACAAGTCCAGCTCCGTTAAATCACGCAACAAATGATGATTCACCACCTGGAACTCACC 1622609 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 |||| || | || ||||| || || ||||||||| || | || |||||||| || Sbjct 1622610 GGACAGCACGCGTCGGGTGTAGATGTTTGAGGTATACGGCTCAAACGATTCATTATTGCC 1622669 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283 || |||||||| || ||||| || ||||| || || || | | | ||| | | ||| Sbjct 1622670 CATTATTTGAGCCGTAGATGCGGTTGGCATGGGCGCAACAAGCAGAGAATTGCGCACACC 1622729 Query 53284 GTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 53341 ||| || |||| || || | | ||| | ||| ||||| | ||| Sbjct 1622730 --ATGCTCCTTGATCGACAGCTTAAGCGAGTTCCAGTCCCAGAGATCGGTTGGTGTCTTG 1622787 Query 53342 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 53400 |||| ||||| || || | | || |||| ||| || || || Sbjct 1622788 CCCCACATATCGTACTGTAAGATACCCTTGCTAACTGGACT-TCCTGGATAGGTTTCATA 1622846 Query 53401 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 53460 ||||||||||| | || | ||| || || || || | ||| || |||| |||||||| Sbjct 1622847 GGGTCCTTCCTTTTGGGCCAATTCGCAGCTGGCTTCCAGTGCGCCAAAATAGATGGTTTC 1622906 Query 53461 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 53520 ||||| | | ||||| | | || || ||| ||| | |||| | | ||||| Sbjct 1622907 AAAGATTTGTTGATTTAAAAGTGCGGCCTCTTCGCTCTCATAAGGATGACGCATTAGAAT 1622966 Query 53521 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 53580 || || || || |||||||| ||||||||||| || |||| ||| | ||| || | Sbjct 1622967 CAATGCATCCGCGAATCCTTGCACACCAATACCAATGGGTCGATGGCGAAAATTGGATTT 1623026 Query 53581 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAAT 53640 | || || |||| ||||| || || || || || |||||||| | || || | Sbjct 1623027 CTTTGCCTCCGGAAGCGGATAGTAGTTGATGTCAATTATTTTATTCAAATTCTTGGTTAC 1623086 Query 53641 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTACAAACA 53696 | |||| || || |||||||| || || | ||||| | | ||||||| Sbjct 1623087 TGTTTTGGTGACTTCTTTCAGTTTCTTGAAGTCGTACGTTTTGTCGGACG-TCACAAACA 1623145 Query 53697 TGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 53756 ||||||||||||| ||||| | ||| || ||||| | |||| | ||| ||| | | Sbjct 1623146 TGTTCAATGCAATCGATGCTAAATTGCACACGGCAATTTCATCGGGTGCCGAATACTCGA 1623205 Query 53757 TTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 53816 || |||||||| |||||||| || |||||||| || | |||||| ||||| ||||| Sbjct 1623206 CAATTTCAGTGCATAGATTACTGCATTTGATGGTGCCCACATTTTGCTGATTGCTCTTGC 1623265 Query 53817 TGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAA 53876 ||| || | ||||| | || ||| | || || ||||| || | ||| | ||| || | Sbjct 1623266 GGTTGCATGAGTCCTTGAACAGCATGTAAGGTGTGCCAGTCTCCACCTGTGCTTCAATGA 1623325 Query 53877 TCGCTTTCCAGACGACACGAGCCTTTATTA-TAGATTTGTATCTCTTTTCTCTTTCGTAT 53935 | || ||| | |||| || |||| | |||| | || | ||||||| | Sbjct 1623326 TGGCAAACCAAAGTGTTTGAGCTTTAATTACTCGATTCG---CTTTGCCCTCTTTCTCGT 1623382 Query 53936 AGTGTA--TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCAT 53993 | || | |||| | ||||| ||||| |||||||||| | | || ||||| | || Sbjct 1623383 ATTGAACGTACAGTTTCTCAAAATCGTCGCCCCAAACATCTTGGAGGCCGGGACACTTAT 1623442 Query 53994 CCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTCATAAAGAGATCAG 54050 || ||||||| ||||| || |||| |||| || ||||||||||| ||||||| Sbjct 1623443 GTGGGCACATCAGGGACCAATCC---TCATTGGCTTCGACGCGTTTCATAAACAGATCAG 1623499 Query 54051 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 54110 | ||||| | || ||| || || | | | ||| ||||| || || || || || | Sbjct 1623500 GTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGCTCCTCTTTGCCCGTGTTTTTCT 1623559 Query 54111 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTC 54170 | | ||| | || | | ||||| ||||||||||| ||||| || |||| | | | Sbjct 1623560 TCAAATCCATAAATTCTAATATATCCGAATGCCACGGCTCCAAATAGATGGCAAATGCAC 1623619 Query 54171 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 54230 | || || || || |||||||| | || | || ||||| | || | || || Sbjct 1623620 CCGGTCGCTTACCGCCACCCTGATCCACATAGCGTGCCACATTATTGAATACACGCAGCA 1623679 Query 54231 TTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAA 54290 |||| | | ||||| || | ||||| || || | || || | || ||||||||| Sbjct 1623680 TTGGCACCAGCCCATTCGAAGTGCCATTCGTGCCACAAATCGAGGTGCCTTTGGCACGAA 1623739 Query 54291 TATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 54350 || | || || || || || || || ||| ||||| | |||||| ||| | Sbjct 1623740 TACAATGAACGTTCAGCCCGATGCCACCAGCGGCTTTGGAGATCATGGCGCATTGTTCGA 1623799 Query 54351 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 54410 | | | |||||||| || ||| | |||| | | || ||||| |||| Sbjct 1623800 CGGATTTGAAAATGCCCTCAATCGAATCGGAGACCATGGTTAAAAGGAAACACGACGACA 1623859 Query 54411 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 54470 |||| ||||| | || | || ||| | || || || || ||||| || | ||| Sbjct 1623860 TTTGCGGACGATTTGTGGCAGCGGCAAAAAGTGTTGGCGATGCATGCGTGAAGTACCTTT 1623919 Query 54471 CAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTG--ATGAATTCCTAC 54528 |||| || ||||| || ||||| | ||| | || |||| ||| | ||| || || | Sbjct 1623920 CAGACAGCAGATTATAGGTCTCCACAGCAGCATCAATAT--CATCGCCATGTATCCCAAT 1623977 Query 54529 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAA 54588 | ||| ||||| | ||||||||| || | || | || |||| ||||| |||||||| Sbjct 1623978 CGAGACGCGCATCAGCATGTGCTGTGGACGCTCTGCTATTTTGTGATTTATCTTCAGCAA 1624037 Query 54589 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 54648 || ||| || | || ||||| |||||||| || || |||||| || ||||| || Sbjct 1624038 ATACGATCGCTCGAGCGTCTTAAATCCAAAATAATTATAGCCAAAGTCACGATCGTAGAT 1624097 Query 54649 AAT 54651 || Sbjct 1624098 GAT 1624100 >seq17439 Length=18325388 Score = 242 bits (268), Expect = 4e-59 Identities = 555/828 (67%), Gaps = 13/828 (2%) Strand=Plus/Plus Query 23847 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 23906 || ||||| ||||| || || |||||||| |||||||| || ||||| || ||||| Sbjct 9056302 TGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCC 9056361 Query 23907 ATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAAT 23966 |||||| ||||||| | ||||| ||| | | || | || | ||| Sbjct 9056362 ATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAGCTCCACCAACAAG 9056421 Query 23967 CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 24026 | ||| || || ||||| |||||| ||||| |||||||||| || || || || Sbjct 9056422 CGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCAGATTT 9056481 Query 24027 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 24086 || || | ||| |||| ||||| || || ||||||| || || || | | ||| Sbjct 9056482 ACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAGAC----GAT 9056537 Query 24087 CTTACTGTTTC-TTCAC---TCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 24142 || | || | | ||||| | || | | || | || | ||||||| | || || Sbjct 9056538 CTCAATGATGCGTTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATCATAACCGCAAA 9056597 Query 24143 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 24202 ||||| || || ||||| || | || | ||||| || || || || |||||||| Sbjct 9056598 GTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCAT 9056657 Query 24203 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 24262 ||||||||||||||||||||| || ||||| ||||| || |||||| || ||||| Sbjct 9056658 TAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTTC 9056717 Query 24263 TACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC--GCTGTCATG-TATCCACTT 24319 || || || |||||||||| | || ||| | ||| || ||| ||||| Sbjct 9056718 GACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAAATCCAAGA 9056777 Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 | ||||| || ||||| |||||| |||||||| || |||||||| |||||||| Sbjct 9056778 GAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTGAAGAGATA 9056837 Query 24380 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 24439 | | || | |||| | ||| || || || | | ||| ||||| || || || Sbjct 9056838 ATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGAGTG 9056897 Query 24440 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499 | || || ||||| || ||||| || ||||| || | ||||| |||||||| ||||| Sbjct 9056898 TACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTTC 9056957 Query 24500 TATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 24559 | ||| || || | | ||| || || || || || || ||| || || || || Sbjct 9056958 CTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAGC 9057017 Query 24560 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATAT 24618 ||| |||||| || |||| || | |||| || || ||| || | || | Sbjct 9057018 CAACACATGTGAAATGAAATGACGCTCATTGTCTGTTAAGCGTA-CCCAGTCCGTCATGT 9057076 Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | || |||| |||||| || ||||| ||||| |||||||| || |||| Sbjct 9057077 CCTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGCCT 9057124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593592168691200