Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq17436 116 3e-21 seq17440 100 2e-16 >seq17436 Length=11997470 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | |||||||||||| || ||||| || || | Sbjct 6693306 CCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6693247 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||||||| ||||| || | || || | |||||| || ||| Sbjct 6693246 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6693187 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | |||||| |||||| Sbjct 6693186 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACC 6693127 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || || |||||||| || || ||||| Sbjct 6693126 TCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6693080 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | |||||||||||| || ||||| || || | Sbjct 6692166 CCACCACGCAGGCGGAGCACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6692107 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||||||| ||||| ||| | || || | |||||| || ||| Sbjct 6692106 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 6692047 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | ||||| |||||| Sbjct 6692046 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6691987 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| ||| ||||||||||| || || || ||||| || || ||||| || Sbjct 6691986 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCATATT 6691937 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | |||||||||||| || ||||| || || | Sbjct 6693078 CCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6693019 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||||||| ||||| ||| | || || | |||||| || ||| Sbjct 6693018 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 6692959 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | ||||| |||||| Sbjct 6692958 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692899 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || || || ||||| || || ||||| Sbjct 6692898 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692852 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | |||||||||||| || ||||| || || | Sbjct 6693534 CCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6693475 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||||||| ||||| || | || || | |||||| || ||| Sbjct 6693474 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6693415 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | |||||| |||||| Sbjct 6693414 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACC 6693355 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || || || ||||| || || ||||| Sbjct 6693354 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6693308 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | ||||||||| || || ||||| || || | Sbjct 6692394 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 6692335 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||||||| ||||| ||| | || || | |||||| || ||| Sbjct 6692334 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 6692275 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | ||||| |||||| Sbjct 6692274 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692215 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || || || ||||| || || ||||| Sbjct 6692214 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692168 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | ||||||||| || || ||||| || || | Sbjct 6692850 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 6692791 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||||||| ||||| || | || || | |||||| || ||| Sbjct 6692790 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6692731 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | ||||| |||||| Sbjct 6692730 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692671 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || || |||||||| || || ||||| Sbjct 6692670 TCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6692624 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | |||||||||||| || || || || || | Sbjct 6692622 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAA 6692563 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||||||| ||||| || | || || | |||||| || ||| Sbjct 6692562 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6692503 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | ||||| |||||| Sbjct 6692502 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692443 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || || || ||||| || || ||||| Sbjct 6692442 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692396 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 20981 GGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGC 21040 ||||||||| || ||||| || || | || || | | || |||||||| ||||| || Sbjct 6693730 GGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGC 6693671 Query 21041 ATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCAC 21100 | || || | |||||| || ||| | ||| |||||||| |||||| ||||| Sbjct 6693670 GAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC 6693611 Query 21101 CTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTT 21160 | | | |||||| |||||| |||| ||| ||||||||||| || || || || Sbjct 6693610 ATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTT 6693551 Query 21161 GACAAATATTTGCAT 21175 ||| || || ||||| Sbjct 6693550 GACGAAGATCTGCAT 6693536 >seq17440 Length=24565398 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || | ||| |||| || | ||| |||||||| |||||||||||||| | Sbjct 435535 TTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGG 435594 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| | | ||||| ||||| || |||||| | || | || ||| || || | Sbjct 435595 ACAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAG 435654 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| || || || || | | | ||| || | ||||||| Sbjct 435655 GAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCA 435714 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | || ||||||||||| || || || || ||||| || |||||| Sbjct 435715 CTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATT 435764 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || | ||| |||| || | ||| |||||||| |||||||||||||| | Sbjct 435991 TTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGG 436050 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| | | ||||| ||||| || |||||| | || | || ||| || || | Sbjct 436051 ACAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAG 436110 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| || || || || | | | ||| || | ||||||| Sbjct 436111 GAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCA 436170 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 ||| | || ||||||||||| || || || || ||||| || ||||| ||| Sbjct 436171 CTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATATTG 436223 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | || | ||| |||| || | ||| |||||||| |||||||||||||| | Sbjct 435307 TTCCTCCCCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGG 435366 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| | | || |||| |||||| || || | || || | ||| ||||| || Sbjct 435367 ACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGG 435426 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| ||||| || || | | | |||||| || || Sbjct 435427 GGATTCCCTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAA 435486 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || |||||||| || || || ||||| || || || |||||| Sbjct 435487 CCTCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435536 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | || | ||| |||| || | ||| |||||||| |||||||||||||| | Sbjct 435763 TTCCTCCCCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGG 435822 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| | | || |||| |||||| || || | || || | ||| ||||| || Sbjct 435823 ACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGG 435882 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| ||||| || || | | | |||||| || || Sbjct 435883 GGATTCCCTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAA 435942 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || |||||||| || || || ||||| || || || |||||| Sbjct 435943 CCTCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422169448807040