Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq17436 116 3e-21
seq17440 100 2e-16
>seq17436
Length=11997470
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| || | |||||||||||| || ||||| || || |
Sbjct 6693306 CCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6693247
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | || |||||||| ||||| || | || || | |||||| || |||
Sbjct 6693246 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6693187
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| ||||| | | | |||||| ||||||
Sbjct 6693186 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACC 6693127
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||| ||||||||||| || || |||||||| || || |||||
Sbjct 6693126 TCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6693080
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| || | |||||||||||| || ||||| || || |
Sbjct 6692166 CCACCACGCAGGCGGAGCACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6692107
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | || |||||||| ||||| ||| | || || | |||||| || |||
Sbjct 6692106 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 6692047
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| ||||| | | | ||||| ||||||
Sbjct 6692046 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6691987
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178
|||| ||| ||||||||||| || || || ||||| || || ||||| ||
Sbjct 6691986 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCATATT 6691937
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| || | |||||||||||| || ||||| || || |
Sbjct 6693078 CCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6693019
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | || |||||||| ||||| ||| | || || | |||||| || |||
Sbjct 6693018 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 6692959
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| ||||| | | | ||||| ||||||
Sbjct 6692958 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692899
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||| ||||||||||| || || || ||||| || || |||||
Sbjct 6692898 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692852
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| || | |||||||||||| || ||||| || || |
Sbjct 6693534 CCACCACGCAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 6693475
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | || |||||||| ||||| || | || || | |||||| || |||
Sbjct 6693474 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6693415
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| ||||| | | | |||||| ||||||
Sbjct 6693414 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGCTCCACC 6693355
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||| ||||||||||| || || || ||||| || || |||||
Sbjct 6693354 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6693308
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| || | ||||||||| || || ||||| || || |
Sbjct 6692394 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 6692335
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | || |||||||| ||||| ||| | || || | |||||| || |||
Sbjct 6692334 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGA 6692275
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| ||||| | | | ||||| ||||||
Sbjct 6692274 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692215
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||| ||||||||||| || || || ||||| || || |||||
Sbjct 6692214 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692168
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| || | ||||||||| || || ||||| || || |
Sbjct 6692850 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGAA 6692791
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | || |||||||| ||||| || | || || | |||||| || |||
Sbjct 6692790 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6692731
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| ||||| | | | ||||| ||||||
Sbjct 6692730 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692671
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||| ||||||||||| || || |||||||| || || |||||
Sbjct 6692670 TCCAAGGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATCTGCAT 6692624
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| || | |||||||||||| || || || || || |
Sbjct 6692622 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAA 6692563
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | || |||||||| ||||| || | || || | |||||| || |||
Sbjct 6692562 AGAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 6692503
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| ||||| | | | ||||| ||||||
Sbjct 6692502 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACC 6692443
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||| ||||||||||| || || || ||||| || || |||||
Sbjct 6692442 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692396
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 20981 GGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGC 21040
||||||||| || ||||| || || | || || | | || |||||||| ||||| ||
Sbjct 6693730 GGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCATCTTCCAGCTGCTTGCCGGC 6693671
Query 21041 ATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCAC 21100
| || || | |||||| || ||| | ||| |||||||| |||||| |||||
Sbjct 6693670 GAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC 6693611
Query 21101 CTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTT 21160
| | | |||||| |||||| |||| ||| ||||||||||| || || || ||
Sbjct 6693610 ATTCTCAATGGTATCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTT 6693551
Query 21161 GACAAATATTTGCAT 21175
||| || || |||||
Sbjct 6693550 GACGAAGATCTGCAT 6693536
>seq17440
Length=24565398
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| |||| || | ||| |||| || | ||| |||||||| |||||||||||||| |
Sbjct 435535 TTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGG 435594
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
|| ||| | | ||||| ||||| || |||||| | || | || ||| || || |
Sbjct 435595 ACAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAG 435654
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | || |||||||| || || || || | | | ||| || | |||||||
Sbjct 435655 GAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCA 435714
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
||| | || ||||||||||| || || || || ||||| || ||||||
Sbjct 435715 CTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATT 435764
Score = 100 bits (110), Expect = 2e-16
Identities = 162/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| |||| || | ||| |||| || | ||| |||||||| |||||||||||||| |
Sbjct 435991 TTCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGG 436050
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
|| ||| | | ||||| ||||| || |||||| | || | || ||| || || |
Sbjct 436051 ACAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAG 436110
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | || |||||||| || || || || | | | ||| || | |||||||
Sbjct 436111 GAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCA 436170
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
||| | || ||||||||||| || || || || ||||| || ||||| |||
Sbjct 436171 CTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATATTG 436223
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || | || | ||| |||| || | ||| |||||||| |||||||||||||| |
Sbjct 435307 TTCCTCCCCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGG 435366
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
|| ||| | | || |||| |||||| || || | || || | ||| ||||| ||
Sbjct 435367 ACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGG 435426
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | || |||||||| ||||| || || | | | |||||| || ||
Sbjct 435427 GGATTCCCTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAA 435486
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
|||| || |||||||| || || || ||||| || || || ||||||
Sbjct 435487 CCTCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435536
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || | || | ||| |||| || | ||| |||||||| |||||||||||||| |
Sbjct 435763 TTCCTCCCCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGG 435822
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
|| ||| | | || |||| |||||| || || | || || | ||| ||||| ||
Sbjct 435823 ACAAGGTGCGACCATCTTCCAACTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGGG 435882
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | || |||||||| ||||| || || | | | |||||| || ||
Sbjct 435883 GGATTCCCTCCTTGTCTTGAATCTTGGCCTTAACGTTCTCAATAGTATCGGAAGGTTCAA 435942
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
|||| || |||||||| || || || ||||| || || || ||||||
Sbjct 435943 CCTCCAGAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAGATCTGCATT 435992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422169448807040
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