Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq17440 91.5 1e-13 >seq17440 Length=24565398 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/156 (74%), Gaps = 8/156 (5%) Strand=Plus/Minus Query 22130 TTTGCCTCGAGGTTTGCACGGCTTTCACGTGCACGAATATGGCGACACGAGCAACGGTTG 22189 |||| | | ||| ||||||||||| || ||||| |||| |||||||| | ||||| || Sbjct 18410374 TTTGGCGCAAGGCTTGCACGGCTTCCATGTGCATGAATTTGGCGACAATACAAACGGATG 18410315 Query 22190 CACGTCGGCCGGTGAGCATTTTAATCC-CACCAATGAGGACCACGGCGCTCC---CGATG 22245 || |||| | || ||| |||||||| ||||| |||| || ||||| || ||||| Sbjct 18410314 CATGTCGTCGGGGCCGCACTTTAATCCTCACCAGA-AGGAGCATGGCGCACCAACCGATG 18410256 Query 22246 CTGAAATTAGGCATGTTGGCGACTTGGGCAACATAA 22281 | || | ||| | ||||| ||||||||||||| Sbjct 18410255 GCG---TTCGTCATCTAGGCGATTTGGGCAACATAA 18410223 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | ||||||||||| || || ||||| || ||| |||||| Sbjct 434852 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAACCTAG 434793 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || ||||| |||||| || || || || | || |||||| Sbjct 434792 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 434733 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || | || ||||| || || ||||| ||||||||| || || |||| ||||| Sbjct 434732 GCAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAA 434673 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| || ||||| || ||||| ||| |||| Sbjct 434672 TATCCAGAAGGAGTCGACTCTCCACTTGGT 434643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410709485140160