Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq17439 414 1e-110 seq17438 129 6e-25 seq17440 125 7e-24 seq17436 114 1e-20 >seq17439 Length=18325388 Score = 414 bits (458), Expect = 1e-110 Identities = 531/726 (73%), Gaps = 16/726 (2%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 ||||||| || || |||||||| || ||||||||||| || |||||||||| || |||| Sbjct 9057124 AGGCCGAAGCATCATTCTGGACTGTGGAGGAGGTGGATCTATCCAAGGACATGACGGACT 9057065 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 ||| ||||| | ||||| ||||| |||||||| || ||| |||| || ||||||| Sbjct 9057064 GGGTACGCTTAACAGACAATGAGCGTCATTTCATTTCACATGTGTTGGCTTTCTTCGCCG 9057005 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TTTCGCTCAGGAGGTGCAGGTG 116833 || ||| ||||| || |||||||||||||| ||||| ||| || ||||| |||||| | Sbjct 9057004 CCTCCGATGGCATTGTTAACGAGAATCTGGTTGAGCGCTTTAGC-CAGGAAGTGCAGATT 9056946 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | |||||||| |||||||| || |||||||| ||||||||||| || ||||| || ||| Sbjct 9056945 ACAGAGGCGCGCTGCTTCTATGGTTTTCAGATTGCCATGGAGAATGTACACTCAGAGATG 9056886 Query 116894 TATTCGACCCTCATCGACACGTACGTGCG-----CTCTTCGGAG-GAGAAGCTCCGTTTG 116947 || || |||||||| || | || ||| || | | || | ||| Sbjct 9056885 TACAGTGTGCTAATCGACACTTATATCCGAGATCCTCATCAGCGCGATTATCTC------ 9056832 Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGCTG 117006 || || || || || || |||||| || |||| | ||||| || |||||||| || Sbjct 9056831 TTCAATGCTATTGAAACAATGCCGGCTGT-AAAGCGTAAGGCGGACTGGGCGCTCTCTTG 9056773 Query 117007 GATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 ||| | || | ||| ||| || |||||| | | |||||||| |||||||| || Sbjct 9056772 GATTTCATCCAAGGCTGCCAACTTTGGGGAGCGCATTATTGCCTTCGCTGCCGTCGAAGG 9056713 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | |||||||| |||||||| ||| |||| || ||||| || || || ||||| ||||| Sbjct 9056712 CATCTTCTTTAGCGGCAGTTTTGCCTCCATCTTCTGGCTTAAAAAGCGTGGCCTAATGCC 9056653 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 ||| ||||||||| ||||||||||||||| | || ||||| ||||||||||||||||| Sbjct 9056652 CGGTCTGACTTTCTCAAACGAGCTCATCTCCCGTGATGAGGGGCTGCATTGCGACTTTGC 9056593 Query 117187 CTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGT 117246 | || ||||| |||| |||||||||| || ||| | ||| ||| |||||||| Sbjct 9056592 GGTTATGATGTTCCAGCACCTGGTGCAGCGTCCCAGCCGTGAACGCATCATTGAGATCGT 9056533 Query 117247 CACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCT 117306 | | || || || | || |||||| || ||||| || || |||| || |||| | Sbjct 9056532 CTCGGATGCTGTGACTATTGAGCAGGAGTTTCTCACTGACGCTTTGCCTGTAAATCTGAT 9056473 Query 117307 GGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCT 117366 || | ||||| | |||||| |||| || |||||||| ||||| | || || | Sbjct 9056472 TGGCATGAATTGTGCGCTGATGTCCGAATATATTGAGTTCGTGGCCGATCGCTTGTTGGT 9056413 Query 117367 CGAGCT 117372 ||||| Sbjct 9056412 GGAGCT 9056407 >seq17438 Length=17193109 Score = 129 bits (142), Expect = 6e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || ||||| || || ||||||||| | || || || || | Sbjct 16961508 AATGCAAATCTTTGTGAAGACACTCACCGGGAAGACCATCACCTTGGAGGTGGAGCCCTC 16961449 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | | |||| || |||| ||||| ||||| || ||| | || || Sbjct 16961448 GGACACCATCGAGAATGTTAAGGCCAAGATTCAGGACAAGGAGGGAATTCCCCCAGATCA 16961389 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 16961388 GCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 16961329 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | |||||||| Sbjct 16961328 CATCCAGAAGGAGTCGACGCTGCA 16961305 >seq17440 Length=24565398 Score = 125 bits (138), Expect = 7e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| | || || || |||||||| | || || ||| | | Sbjct 434852 AATGCAGATCTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAACCTAG 434793 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | ||| |||||| ||||||| ||||| ||||| || || | || || Sbjct 434792 CGACACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCA 434733 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || |||||| |||| || | |||||| | ||||||||| Sbjct 434732 GCAGCGTCTCATCTTCGCCGGAAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAA 434673 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||| | || || || | || |||| || |||| ||| || Sbjct 434672 TATCCAGAAGGAGTCGACTCTCCACTTGGTTCTGCGTCTGCGGGGTGGCTGC 434621 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || ||||| || || ||||| || | || || ||| | | Sbjct 435080 AATGCAGATCTTTGTGAAGACCCTCACTGGAAAGACCATTACTCTGGAGGTTGAACCTTC 435021 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | |||| | |||| || || | ||||| ||||| |||||| | |||| Sbjct 435020 CGACACAATTGAGAACGTT-AAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACC 434962 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||||| || ||||| || || | ||||| | |||||||| Sbjct 434961 AGCAGCGTTTGATCTTTGCGGGAAAGCAGCTTGAGGATGGTCGCACTTTGTCCGACTACA 434902 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | |||||||||||| |||| || ||| | || | || | ||||| || Sbjct 434901 ATATCCAGAAGGAGTCCACCCTTCATTTGGTTCTCCGTCTCAGGGGAGG 434853 >seq17436 Length=11997470 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| || || | || ||||| ||||||||| | || || || Sbjct 6691935 GAAATATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGC 6691994 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||| | | | | | | |||| || || | ||||| |||||||| ||| | | Sbjct 6691995 CTTCCGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAG 6692054 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| || ||||| |||||||| || | ||||| || || | Sbjct 6692055 ATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATT 6692114 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||||| |||| || || | ||| | ||| || | || ||| Sbjct 6692115 ACAACATCCAGAAGGAGTCCACTCTACACTTGGTGCTCCGCCTGCGTGGTGGC 6692167 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || ||||| ||||||||| | || || || | | Sbjct 6693080 ATGCAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 6693139 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||||| |||||||| ||| | || ||| Sbjct 6693140 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6693199 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| || || |||||| Sbjct 6693200 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6693259 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || | ||| | ||| || | || ||| Sbjct 6693260 ATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGCCTGCGTGGTGGC 6693307 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || ||||| ||||||||| | || || || | || Sbjct 6692624 ATGCAGATCTTCGTCAAAACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692683 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||||| |||||||| ||| | || ||| Sbjct 6692684 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6692743 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| || || |||||| Sbjct 6692744 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6692803 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| ||| |||| || || Sbjct 6692804 ATCCAGAAAGAGTCCACTCTCCA 6692826 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || || || | || Sbjct 6692852 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692911 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||||| |||||||| ||| | || ||| Sbjct 6692912 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6692971 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| |||||||| || | ||||| || || |||||| Sbjct 6692972 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6693031 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || | ||| | ||| || | || ||| Sbjct 6693032 ATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGCCTGCGTGGTGGC 6693079 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || || || | | Sbjct 6693308 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 6693367 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||||| |||||||| ||| | || ||| Sbjct 6693368 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6693427 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| || || |||||| Sbjct 6693428 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6693487 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || | ||| | ||| || | || ||| Sbjct 6693488 ATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGCCTGCGTGGTGGC 6693535 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || || || | || Sbjct 6692396 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692455 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||||| |||||||| ||| | || ||| Sbjct 6692456 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6692515 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| || || ||||| Sbjct 6692516 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAT 6692575 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 6692576 ATCCAGAAGGAGTCCACTCTCCA 6692598 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || || || | || Sbjct 6692168 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 6692227 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||||| |||||||| ||| | || ||| Sbjct 6692228 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6692287 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| |||||||| || | ||||| || || |||||| Sbjct 6692288 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6692347 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| ||| |||| || || Sbjct 6692348 ATCCAGAAAGAGTCCACTCTCCA 6692370 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| | || || || | | Sbjct 6693536 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 6693595 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||||| |||||||| ||| | || ||| Sbjct 6693596 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 6693655 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| || || |||||| Sbjct 6693656 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTCTTTCTGATTACAAC 6693715 Query 40870 ATCCAGAAGGAGGCC 40884 |||||||||||| || Sbjct 6693716 ATCCAGAAGGAGTCC 6693730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515106882214400