Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq17439 105 1e-17
seq4835 95.1 2e-14
>seq17439
Length=18325388
Score = 105 bits (116), Expect = 1e-17
Identities = 199/290 (69%), Gaps = 2/290 (1%)
Strand=Plus/Plus
Query 189448 TCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACG 189507
||| ||||| || | || ||||| |||||| || || ||||||||| | ||| | ||
Sbjct 5993654 TCTTTGGAATTCGGCTCAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTTCTGCG 5993713
Query 189508 AATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTA 189567
|||||||||||| || |||||||| || ||||| || || || |||||| ||
Sbjct 5993714 AATGTATTGGGCCAAAAAGATACTCGAGTGGACGGCGACGCCGGAGCTGGCTTTGGAGTA 5993773
Query 189568 TAGTATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGG 189627
| | || ||||| ||||||| || || || ||||| || || || || ||
Sbjct 5993774 TTGCATACTGCTGAACGACAAGTATAGCCTGGATGGTCGCGATCCCAATGGCTATGTGGG 5993833
Query 189628 TTGTATGTGGTCTATTTGCGGATTACACGAT-AGAGCGTGGAAAGAAAGACCGATATTTG 189686
|| |||||||| ||| | || | |||||| || || |||| || | | || ||||
Sbjct 5993834 CTGCATGTGGTCCATTGGTGGTCTTCACGATCAGGGC-TGGAGGGAGCGTGCCATCTTTG 5993892
Query 189687 GAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTT 189736
| || ||| | | ||||| ||| | | | ||| ||| |||||||||
Sbjct 5993893 GCAAAATACGCTTCATGAACTATCAAGGCTGCAAGCGGAAGTTTGATGTT 5993942
>seq4835
Length=1216
Score = 95.1 bits (104), Expect = 2e-14
Identities = 178/259 (69%), Gaps = 2/259 (1%)
Strand=Plus/Minus
Query 189448 TCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACG 189507
||| ||||| || | || ||||| |||||| || || ||||||||| | ||| | ||
Sbjct 260 TCTTTGGAATTCGGCGCAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTTCTGCG 201
Query 189508 AATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTA 189567
|||||||||||| || |||||||| || ||||| || || || |||||| ||
Sbjct 200 AATGTATTGGGCCAAAAAGATACTCGAGTGGACGGCGACGCCGGAGCTGGCTTTGGAGTA 141
Query 189568 TAGTATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGG 189627
| | || ||||| ||||||| || || || ||||| || || || || ||
Sbjct 140 TTGCATACTGCTGAACGACAAGTATAGCCTGGATGGTCGTGATCCCAATGGCTATGTGGG 81
Query 189628 TTGTATGTGGTCTATTTGCGGATTACACGAT-AGAGCGTGGAAAGAAAGACCGATATTTG 189686
|| |||||||| ||| | || | |||||| || || |||| || | | || ||||
Sbjct 80 CTGCATGTGGTCCATTGGTGGTCTTCACGATCAGGGC-TGGAGGGAGCGTGCCATCTTTG 22
Query 189687 GAAAGATAAGATATATGAA 189705
| || ||| | | |||||
Sbjct 21 GCAAAATACGCTTCATGAA 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 922995543097600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |