Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq17439 105 1e-17 seq4835 95.1 2e-14 >seq17439 Length=18325388 Score = 105 bits (116), Expect = 1e-17 Identities = 199/290 (69%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 189448 TCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACG 189507 ||| ||||| || | || ||||| |||||| || || ||||||||| | ||| | || Sbjct 5993654 TCTTTGGAATTCGGCTCAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTTCTGCG 5993713 Query 189508 AATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTA 189567 |||||||||||| || |||||||| || ||||| || || || |||||| || Sbjct 5993714 AATGTATTGGGCCAAAAAGATACTCGAGTGGACGGCGACGCCGGAGCTGGCTTTGGAGTA 5993773 Query 189568 TAGTATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGG 189627 | | || ||||| ||||||| || || || ||||| || || || || || Sbjct 5993774 TTGCATACTGCTGAACGACAAGTATAGCCTGGATGGTCGCGATCCCAATGGCTATGTGGG 5993833 Query 189628 TTGTATGTGGTCTATTTGCGGATTACACGAT-AGAGCGTGGAAAGAAAGACCGATATTTG 189686 || |||||||| ||| | || | |||||| || || |||| || | | || |||| Sbjct 5993834 CTGCATGTGGTCCATTGGTGGTCTTCACGATCAGGGC-TGGAGGGAGCGTGCCATCTTTG 5993892 Query 189687 GAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTT 189736 | || ||| | | ||||| ||| | | | ||| ||| ||||||||| Sbjct 5993893 GCAAAATACGCTTCATGAACTATCAAGGCTGCAAGCGGAAGTTTGATGTT 5993942 >seq4835 Length=1216 Score = 95.1 bits (104), Expect = 2e-14 Identities = 178/259 (69%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 189448 TCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACG 189507 ||| ||||| || | || ||||| |||||| || || ||||||||| | ||| | || Sbjct 260 TCTTTGGAATTCGGCGCAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTTCTGCG 201 Query 189508 AATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTA 189567 |||||||||||| || |||||||| || ||||| || || || |||||| || Sbjct 200 AATGTATTGGGCCAAAAAGATACTCGAGTGGACGGCGACGCCGGAGCTGGCTTTGGAGTA 141 Query 189568 TAGTATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGG 189627 | | || ||||| ||||||| || || || ||||| || || || || || Sbjct 140 TTGCATACTGCTGAACGACAAGTATAGCCTGGATGGTCGTGATCCCAATGGCTATGTGGG 81 Query 189628 TTGTATGTGGTCTATTTGCGGATTACACGAT-AGAGCGTGGAAAGAAAGACCGATATTTG 189686 || |||||||| ||| | || | |||||| || || |||| || | | || |||| Sbjct 80 CTGCATGTGGTCCATTGGTGGTCTTCACGATCAGGGC-TGGAGGGAGCGTGCCATCTTTG 22 Query 189687 GAAAGATAAGATATATGAA 189705 | || ||| | | ||||| Sbjct 21 GCAAAATACGCTTCATGAA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922995543097600