Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30]
17,440 sequences; 200,467,819 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq17440 105 8e-18
seq17436 105 8e-18
seq17438 96.9 4e-15
seq17431 96.9 4e-15
seq17434 95.1 1e-14
seq14924 95.1 1e-14
>seq17440
Length=24565398
Score = 105 bits (116), Expect = 8e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
||||||||| | ||| | ||||| || | || |||||| ||||| || || || |
Sbjct 435536 TCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGA 435595
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| || || | || || |||||||| || || || || | |||||| || || | ||
Sbjct 435596 CAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGG 435655
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134
| | |||||||||| ||| |||| | |||| | | | |||||||| | ||||
Sbjct 435656 AATTCCCTCCTTGTCC-TGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCA 435714
Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
| || | |||||||| ||||| || | |||||||||||||| ||||||
Sbjct 435715 CTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATT 435764
Score = 105 bits (116), Expect = 8e-18
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
||||||||| | ||| | ||||| || | || |||||| ||||| || || || |
Sbjct 435992 TCCTCCTCTGAGACGGAGAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTATAGTCGGA 436051
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| || || | || || |||||||| || || || || | |||||| || || | ||
Sbjct 436052 CAAGGTACGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAATCGCTGTTGATCTGGAGG 436111
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134
| | |||||||||| ||| |||| | |||| | | | |||||||| | ||||
Sbjct 436112 AATTCCCTCCTTGTCC-TGAATTTTAGCCTTGACATTTTCAATAGTGTCGCTGGGCTCCA 436170
Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
| || | |||||||| ||||| || | |||||||||||||| ||||| ||
Sbjct 436171 CTTCTAAAGTGATGGTCTTGCCAGTCAATGTCTTTACAAAGATCTGCATATT 436222
Score = 98.7 bits (108), Expect = 1e-15
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
|||||| || | ||| | |||||||| | ||| |||||| || |||||||| || |
Sbjct 434852 TCCTCCCCTGAGACGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 434911
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| ||| || | || || |||||||| || || || || | ||||||||||| | ||
Sbjct 434912 CAAAGTGCGACCATCCTCAAGCTGCTTTCCCGCAAAGATCAAACGCTGCTGGTCTGGGGG 434971
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135
| | ||||||||| ||| || || | || | | |||||| | ||| ||
Sbjct 434972 GATTCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTCTCAATTGTGTCGGAAGGTTCAAC 435031
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|| | || ||||| || || || || ||||| |||||||| ||||||
Sbjct 435032 CTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCATT 435080
Score = 96.9 bits (106), Expect = 4e-15
Identities = 71/82 (87%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 23275152 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 23275093
Query 60125 ATACTACCGAGGA--TTGAATA 60144
|||||| |||||| |||||||
Sbjct 23275092 ATACTATCGAGGACGTTGAATA 23275071
>seq17436
Length=11997470
Score = 105 bits (116), Expect = 8e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | |||||| || | ||| |||||| || ||||||||||||| ||||| || |
Sbjct 6692611 ACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCC 6692552
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || |||||||| || ||||| || || |||||||| || | || | || ||||||
Sbjct 6692551 ATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTT 6692492
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
|||| ||| || || | || | | || ||| | ||||| || | |||||
Sbjct 6692491 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAGGTGAT 6692432
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| ||||| || | ||||| || ||||| |||||
Sbjct 6692431 GGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 6692396
Score = 95.1 bits (104), Expect = 1e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|| ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||
Sbjct 11499637 TTCTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 11499578
Query 60122 ACTATACTACCGAGGAT 60138
||||||||| |||||||
Sbjct 11499577 ACTATACTATCGAGGAT 11499561
>seq17438
Length=17193109
Score = 96.9 bits (106), Expect = 4e-15
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119
|||| ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |
Sbjct 7753976 AATTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAA 7754035
Query 60120 CCACTATACTACCGAGGA 60137
||||||||||| ||||||
Sbjct 7754036 CCACTATACTATCGAGGA 7754053
Score = 95.1 bits (104), Expect = 1e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||
Sbjct 7752925 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 7752866
Query 60124 TATACTACCGAGGATTG 60140
||||||| |||||| ||
Sbjct 7752865 TATACTATCGAGGACTG 7752849
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/81 (86%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 9348272 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 9348331
Query 60125 ATACTACCGAGGA--TTGAAT 60143
|||||| |||||| ||||||
Sbjct 9348332 ATACTATCGAGGATGTTGAAT 9348352
Score = 93.3 bits (102), Expect = 5e-14
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118
||| | ||||| || | |||||| |||||| ||||||||||||||||||||| |||||
Sbjct 7753181 AAAGTCTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTA 7753122
Query 60119 ACCACTATACTACCGAGGA 60137
|||||||||||| ||||||
Sbjct 7753121 ACCACTATACTATCGAGGA 7753103
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|| ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||
Sbjct 7753594 TTGTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 7753535
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 7753534 ACTATACTATCGAGGA 7753519
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 7764945 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 7765004
Query 60125 ATACTACCGAGGAT 60138
|||||| |||||||
Sbjct 7765005 ATACTATCGAGGAT 7765018
Score = 89.7 bits (98), Expect = 6e-13
Identities = 152/218 (70%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | |||||| |||| || |||||| || || ||||| || | ||| || || |
Sbjct 16961292 ACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 16961351
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || |||||||| || || || || | |||||||| || | || | | ||||||
Sbjct 16961352 ATCTTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTT 16961411
Query 43088 GTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
|||| ||| | || | | | | | | | | ||||| | ||||| || | ||||
Sbjct 16961412 GTCC-TGAATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGCTCCACCTCCAAGGTGA 16961470
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|||| || || || || ||||| |||||||||||||||
Sbjct 16961471 TGGTCTTCCCGGTGAGTGTCTTCACAAAGATTTGCATT 16961508
>seq17431
Length=5172618
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 2186008 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 2185949
Query 60125 ATACTACCGAGGATTG 60140
|||||| |||||||||
Sbjct 2185948 ATACTATCGAGGATTG 2185933
>seq17434
Length=8399593
Score = 95.1 bits (104), Expect = 1e-14
Identities = 72/85 (85%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113
||| ||| | ||||| || | |||||| |||||| ||||||||||||||||||||| |
Sbjct 987580 ATGTAAACATCTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 987639
Query 60114 TACTCACCACTATACTACCGAGGAT 60138
|||| |||||||||||| |||||||
Sbjct 987640 TACTAACCACTATACTATCGAGGAT 987664
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
|||||| |||||||| ||| || ||||| |||||||||| ||||| || | || ||
Sbjct 1558150 CACCAAGTGCAATGTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGACCATCTTC 1558091
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
| ||||| ||||| || || | |||||||| || | || | | || ||||||
Sbjct 1558090 CAATTGCTTGCCAGCAAAGATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 1558031
Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
||| || ||||| | | | || || || ||| || || | |||||||| ||
Sbjct 1558030 GATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 1557971
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| || || || || |||||||||||
Sbjct 1557970 ACCCGTGAGGGTTTTAACGAAGATTTGCAT 1557941
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 4666226 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4666167
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 4666166 ATACTATCGAGGA 4666154
>seq14924
Length=5632
Score = 95.1 bits (104), Expect = 1e-14
Identities = 70/81 (86%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 1920 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1979
Query 60125 ATACTACCGAGGA--TTGAAT 60143
|||||| |||||| ||||||
Sbjct 1980 ATACTATCGAGGATGTTGAAT 2000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571692943763200
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