Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq17439 167 2e-36 >seq17439 Length=18325388 Score = 167 bits (184), Expect = 2e-36 Identities = 577/899 (64%), Gaps = 6/899 (1%) Strand=Plus/Plus Query 15874 TAATAATTAACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACAT 15933 |||||| |||||| ||||| ||| || | ||| || || || |||||| | Sbjct 9056229 TAATAAACGACTTTAGAAATCTGCATCGAGTGTAAATACGTTGTCCAACCGATTTGATGT 9056288 Query 15934 AACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAA 15993 || ||| |||||||| | ||| |||| ||||| ||||| ||||| || || || Sbjct 9056289 CACGCCCATGCGCTGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAA 9056348 Query 15994 TGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAA 16053 |||||| ||||||| ||| ||| ||||| |||| ||| |||| || || | Sbjct 9056349 TGAAATCATTTCCATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAG 9056408 Query 16054 TTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCAT 16113 |||| ||| || | ||| ||||| || || ||||| | ||| | |||| ||||| Sbjct 9056409 CTCCACCAACAAGCGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCAT 9056468 Query 16114 TCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTC 16173 || || | || ||||| | || || || | ||| | | || ||| | || || || Sbjct 9056469 GCCAATCAGATTTACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATC 9056528 Query 16174 AATGATTATATCTCTTAC---TACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACAT 16230 || || || | | | ||| | ||| | | | | ||| | ||||| Sbjct 9056529 CGAGACGATCTCAATGATGCGTTCACGGCTG---GGACGCTGCACCAGGTGCTGGAACAT 9056585 Query 16231 TATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGT 16290 ||| ||||| || ||||||| || || || | || | ||||||||| || || Sbjct 9056586 CATAACCGCAAAGTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGT 9056645 Query 16291 AAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAA 16350 ||||| |||||||| || || ||||||| ||| || || | |||||| || ||| Sbjct 9056646 CAGACCGGGCATTAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAA 9056705 Query 16351 GAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttact 16410 ||| || ||||| || || || || |||| | ||||| || | | | || Sbjct 9056706 GAAGATGCCTTCGACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGA 9056765 Query 16411 ttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGC 16470 | ||||| ||||| | || || | || ||| ||| | || || || Sbjct 9056766 TGAAATCCAAGAGAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGC 9056825 Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATA 16530 ||| || | ||||| | | |||| |||||||| || ||||| | ||| || Sbjct 9056826 ATTGAAGAGATAATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTA 9056885 Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGA 16590 ||| ||||| || | ||||||||| || |||||||||||||| ||||| | || || | Sbjct 9056886 CATCTCTGAGTGTACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGT 9056945 Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650 || || ||||| | ||| | || | | || |||||||| || |||||| || Sbjct 9056946 AATCTGCACTTCCTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGC 9057005 Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCA 16710 || || || || | | ||| ||| |||| || || |||| | || ||| Sbjct 9057006 GGCGAAGAAAGCCAACACATGTGAAATGAAATGACGCTCATTGTCTGTTAAGCGTACCCA 9057065 Query 16711 GTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 ||| | | || || |||| ||| ||||| || |||||||| || || || | |||| Sbjct 9057066 GTCCGTCATGTCCTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGCCT 9057124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462411172384000