Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq17439 140 3e-28 >seq17439 Length=18325388 Score = 140 bits (154), Expect = 3e-28 Identities = 472/734 (64%), Gaps = 6/734 (1%) Strand=Plus/Plus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 |||||||| |||||||| | ||| | || ||||| || || |||||||| |||| | Sbjct 9056290 ACGCCCATGCGCTGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAAT 9056349 Query 13964 GATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 14023 || || ||||||| ||| ||||||||| ||| || | | |||| | ||| || Sbjct 9056350 GAAATCATTTCCATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAGC 9056409 Query 14024 TCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATA 14083 || | | || | ||| || | |||||||||||||| ||||| | |||||||||| Sbjct 9056410 TCCACCAACAAGCGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATG 9056469 Query 14084 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 14143 || || || |||||||| | | || | ||| || | || |||| |||||| || Sbjct 9056470 CCAATCAGATTTACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATC- 9056528 Query 14144 TTTATAATAATCGTAATAAT---TTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT 14200 | ||| ||| || |||| ||| | | || || | || || Sbjct 9056529 --CGAGACGATCTCAATGATGCGTTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATC 9056586 Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 | | |||||| || ||||| || |||||||| | || || |||||||| || || Sbjct 9056587 ATAACCGCAAAGTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTC 9056646 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 | || ||||| | || || ||||| | ||| || || | || || ||| |||| Sbjct 9056647 AGACCGGGCATTAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAG 9056706 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || || || || || ||||| || || || | || || ||||| || ||| Sbjct 9056707 AAGATGCCTTCGACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGAT 9056766 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 || ||||| ||||| || | || || | | |||||||||||||||| Sbjct 9056767 GAAATCCAAGAGAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCA 9056826 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 || || | || || || | || | | || || || || || || | || ||| Sbjct 9056827 TTGAAGAGATAATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTAC 9056886 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 || || ||||||| || ||||| || |||||||||||||| || || | || |||| Sbjct 9056887 ATCTCTGAGTGTACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTA 9056946 Query 14561 CATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14620 || || || | ||| | || ||| ||| || ||||| || ||||| || Sbjct 9056947 ATCTGCACTTCCTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCG 9057006 Query 14621 GCAAAAAATGCCAA 14634 || || || ||||| Sbjct 9057007 GCGAAGAAAGCCAA 9057020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482240448659200