Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq17439 107 4e-18 >seq17439 Length=18325388 Score = 107 bits (118), Expect = 4e-18 Identities = 301/458 (66%), Gaps = 8/458 (2%) Strand=Plus/Minus Query 101902 TTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATT 101961 ||||| ||| | ||| ||||||| ||||| || ||||| ||||||||||| || || Sbjct 9056750 TTTGG-GGAGCGCATTATTGCCTTCGCTGCCGTCGAAGGCATCTTCTTTAGCGGCAGTTT 9056692 Query 101962 CGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || ||||| |||||| | || || | || | |||| ||||| || | ||| || || Sbjct 9056691 TGCCTCCATCTTCTGGCTTAAAAAGCGTGGCCTAATGCCCGGTCTGACTTTCTCAAACGA 9056632 Query 102022 GTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGG 102081 | |||| || | || || || || ||| |||||||||| ||| |||| | | Sbjct 9056631 GCTCATCTCCCGTGATGAGGGGCTGCATTGCGACTTTGCGGTTATGATGTTCCA----GC 9056576 Query 102082 TTTTGTTGATAC--CCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGA 102139 || || | |||| | | ||| | || |||| || ||| | || || || Sbjct 9056575 ACCTGGTGCAGCGTCCCAGC-CGTGAACGCATCATTGAGATCGTCTCGGATGCTGTGACT 9056517 Query 102140 ATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAG 102199 ||||| || || |||||||| | | ||||||| || | | || ||||| || | Sbjct 9056516 ATTGAGCAGGAGTTTCTCACTGACGCTTTGCCTGTAAATCTGATTGGCATGAATTGTGCG 9056457 Query 102200 TTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAA 102259 ||||| | | || ||||| || ||||| ||| | ||||| || | || | | Sbjct 9056456 CTGATGTCCGAATATATTGAGTTCGTGGCCGATCGCTTGTTGGTGGAGCTCGGTGTCGGT 9056397 Query 102260 AAGCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAG 102319 || ||||| | || || || | |||||||| | ||||| | || ||| Sbjct 9056396 AAAATATATAACACAAAGAATCCATTTACTTTCATGGAAATGATTTCATTGGACGGTAAA 9056337 Query 102320 ACCAACTTTTTTGAAAAGAGAGTCGCCGAGTATCAACG 102357 ||||| |||||||| |||| ||| | ||| ||||| || Sbjct 9056336 ACCAATTTTTTTGAGAAGAAAGTGGGCGAATATCAGCG 9056299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989362877455200