Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq17434 437 1e-117 seq17439 271 1e-67 >seq17434 Length=8399593 Score = 437 bits (484), Expect = 1e-117 Identities = 1244/1901 (65%), Gaps = 32/1901 (2%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||| || |||| | | || || ||||| || ||||| ||||||||||| || ||| Sbjct 1622251 GTGAACTGTATGGCATTTGCAGCCGGCTTCGTGCGAAGATAATACATTCCCGTCTTAAGA 1622310 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 ||| |||| ||||||||| || || |||||| ||| | || || || | | Sbjct 1622311 CCGGCTTTCCACGAGTAAAAATGGATCGATGTCAGTTTGCCATAGTTGGGCTCAGCCACA 1622370 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || || || | || ||||||||||| ||||| || || | || || |||||||| || Sbjct 1622371 TGTATGTTGAACGACTGACTTTGATCAATGAATGCCCCGCGATCGGCTGCCATTTTGATC 1622430 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 | || || | |||||||| | || ||||| | | | | || || ||| | | Sbjct 1622431 GTTGTTTTCACGGATATTTCCCACACGGTCTTATACAGATCCCTCACATTTTTTGGTATG 1622490 Query 62286 --TTTG-TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 || | | || || || ||||| | | | || || |||||| || ||||||| | Sbjct 1622491 GATTCGATGTTTTGTATTGATCCTCGACTGGCGATTATTTGATTCTTCATATCATCATCC 1622550 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 || || | ||| |||||| | | | | ||| | || || || ||||| || || Sbjct 1622551 CACAAGTCCAGCTCCGTTAAATCACGCAACAAATGATGATTCACCACCTGGAACTCACCG 1622610 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 |||| || | || ||||| || || ||||||||| || | ||| |||||||| ||| Sbjct 1622611 GACAGCACGCGTCGGGTGTAGATGTTTGAGGTATACGGCTCAAACGATTCATTATTGCCC 1622670 Query 62463 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62522 | |||||||| || ||||| || ||||| || || || | | | ||| | | ||| Sbjct 1622671 ATTATTTGAGCCGTAGATGCGGTTGGCATGGGCGCAACAAGCAGAGAATTGCGCACACC- 1622729 Query 62523 TATGTTC--TGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580 ||| || |||| || || | ||| | ||| ||||| | ||| Sbjct 1622730 -ATGCTCCTTGATCGACAGCTTAAGCGAGTTCCAGTCCCAGAGATCGGTTGGTGTCTTGC 1622788 Query 62581 NNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATAT 62639 || |||| ||||| || || | | || |||| ||| || ||||| Sbjct 1622789 CCCACATATCGTACTGTAAGATACCCTTGCTAACTGGACT-TCCTGGATAGGTTTCATAG 1622847 Query 62640 GGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCA 62699 ||||||||||| | || | || || || || || | ||| || |||| ||||||||| Sbjct 1622848 GGTCCTTCCTTTTGGGCCAATTCGCAGCTGGCTTCCAGTGCGCCAAAATAGATGGTTTCA 1622907 Query 62700 AAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATA 62759 ||||| | | ||||| | | || || ||| ||| | |||| | | ||||| Sbjct 1622908 AAGATTTGTTGATTTAAAAGTGCGGCCTCTTCGCTCTCATAAGGATGACGCATTAGAATC 1622967 Query 62760 AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATT 62819 || || ||||| |||||||| ||||||||||| || |||| ||| | ||| || | Sbjct 1622968 AATGCATCCGCGAATCCTTGCACACCAATACCAATGGGTCGATGGCGAAAATTGGATTTC 1623027 Query 62820 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATT 62879 | || || |||| ||||| || || || || || |||||||| | ||| || | | Sbjct 1623028 TTTGCCTCCGGAAGCGGATAGTAGTTGATGTCAATTATTTTATTCAAATTCTTGGTTACT 1623087 Query 62880 ACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCCCATCTATTACAAA 62932 |||| || || |||||||| || || | ||| | || ||||| Sbjct 1623088 GTTTTGGTGACTTCTTTCAGTTTCTTGAAGTCGTACGTTTTGTCGGACGTC----ACAAA 1623143 Query 62933 CATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTG 62992 |||||||||||||| ||||| | ||| |||||||| | |||| | ||| ||| | Sbjct 1623144 CATGTTCAATGCAATCGATGCTAAATTGCACACGGCAATTTCATCGGGTGCCGAATACTC 1623203 Query 62993 TATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTT 63052 | || |||||||| |||||||| || ||||| || || | |||||| ||||| ||||| Sbjct 1623204 GACAATTTCAGTGCATAGATTACTGCATTTGATGGTGCCCACATTTTGCTGATTGCTCTT 1623263 Query 63053 TTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTAT 63112 ||| || | ||||| | || ||| | || || ||||| || | ||| | ||| || Sbjct 1623264 GCGGTTGCATGAGTCCTTGAACAGCATGTAAGGTGTGCCAGTCTCCACCTGTGCTTCAAT 1623323 Query 63113 AATCGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCCTTTCTCTTTCGT 63171 || || ||| | | |||| || |||| | |||| | | || | || | |||| Sbjct 1623324 GATGGCAAACCAAAGTGTTTGAGCTTTAATTACTCGATTCGCTTTGCCCT-CTTTCTCGT 1623382 Query 63172 ATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCAT 63231 || || |||| | || || ||||| |||||||||| | | | ||||| | || Sbjct 1623383 ATTGAACGTACAGTTTCTCAAAATCGTCGCCCCAAACATCTTGGAGGCCGGGACACTTAT 1623442 Query 63232 CCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTCATAAAGAGATCAG 63288 || ||||||| ||||| || |||| |||| || ||||||||||| ||||||| Sbjct 1623443 GTGGGCACATCAGGGACCAATCC---TCATTGGCTTCGACGCGTTTCATAAACAGATCAG 1623499 Query 63289 GAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 63348 | ||||| | || ||| || || | || | ||| ||||| || || || || || | Sbjct 1623500 GTATCCATAAGGCATAAAACAGCTCACGTGCCCGATGCTCCTCTTTGCCCGTGTTTTTCT 1623559 Query 63349 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63408 | | ||| | || | | ||||| ||||||||||| ||||| || ||||| | | | Sbjct 1623560 TCAAATCCATAAATTCTAATATATCCGAATGCCACGGCTCCAAATAGATGGCAAATGCAC 1623619 Query 63409 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63468 | || || || || |||||||| | || | || ||||| | || | || || Sbjct 1623620 CCGGTCGCTTACCGCCACCCTGATCCACATAGCGTGCCACATTATTGAATACACGCAGCA 1623679 Query 63469 TTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAA 63528 |||| | | || || || | ||||| || || | || || || ||||||||| Sbjct 1623680 TTGGCACCAGCCCATTCGAAGTGCCATTCGTGCCACAAATCGAGGTGCCTTTGGCACGAA 1623739 Query 63529 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 63588 || | || || || || || || || ||| ||||| | |||||| ||| | Sbjct 1623740 TACAATGAACGTTCAGCCCGATGCCACCAGCGGCTTTGGAGATCATGGCGCATTGTTCGA 1623799 Query 63589 ACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA 63648 | | | ||||| || || ||| || |||| | | || ||||| |||| Sbjct 1623800 CGGATTTGAAAATGCCCTCAATCGAATCGGAGACCATGGTTAAAAGGAAACACGACGACA 1623859 Query 63649 TTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 63708 |||| ||||| | || | || ||| | || || || || ||||| || | ||| Sbjct 1623860 TTTGCGGACGATTTGTGGCAGCGGCAAAAAGTGTTGGCGATGCATGCGTGAAGTACCTTT 1623919 Query 63709 CAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTAC 63766 |||| || ||||| || ||||| | ||| | || |||| ||| | ||| || || | Sbjct 1623920 CAGACAGCAGATTATAGGTCTCCACAGCAGCATCAATAT--CATCGCCATGTATCCCAAT 1623977 Query 63767 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAA 63826 | ||| ||||| | ||||||||| || | || | ||||||| ||||| |||| ||| Sbjct 1623978 CGAGACGCGCATCAGCATGTGCTGTGGACGCTCTGCTATTTTGTGATTTATCTTCAGCAA 1624037 Query 63827 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63886 || ||| || | || ||||| |||||||| || || |||||| || ||||| || Sbjct 1624038 ATACGATCGCTCGAGCGTCTTAAATCCAAAATAATTATAGCCAAAGTCACGATCGTAGAT 1624097 Query 63887 AATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATAT 63927 || | ||||| | ||| || ||| ||||| |||| Sbjct 1624098 GATCGCAGAATTTAAGCGATCGGCATGTTTCTTAACAATAT 1624138 >seq17439 Length=18325388 Score = 271 bits (300), Expect = 1e-67 Identities = 561/827 (68%), Gaps = 11/827 (1%) Strand=Plus/Plus Query 33294 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33353 || ||||| ||||| || || |||||||| ||||| || |||||||| || ||||| Sbjct 9056302 TGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCC 9056361 Query 33354 ATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAAT 33413 |||||| ||| ||||| | || || ||||| | || | || | ||| Sbjct 9056362 ATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAGCTCCACCAACAAG 9056421 Query 33414 CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 33473 | ||| || ||||| || |||||| ||||| |||||||||| || || || || Sbjct 9056422 CGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCAGATTT 9056481 Query 33474 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAAT 33533 || || | ||| |||| ||||| || || ||||| | || |||| | | || | Sbjct 9056482 ACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAGACGATC--T 9056539 Query 33534 CTAACGGTTTCTTCAC---TCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAA 33590 | || | | ||||| | || | || | | || | ||||||| | || || Sbjct 9056540 C-AATGATGCGTTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATCATAACCGCAAAG 9056598 Query 33591 TCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATT 33650 ||||| ||||| ||||| || | || | ||||| || || || || ||||||||| Sbjct 9056599 TCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCATT 9056658 Query 33651 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCT 33710 |||||||||||||||||||| || ||||| || || ||| ||||||||| ||||| Sbjct 9056659 AGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTTCG 9056718 Query 33711 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-TATCCACTTT 33767 || ||||| |||||||||| | ||| ||| | ||| || ||| ||||| Sbjct 9056719 ACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAAATCCAAGAG 9056778 Query 33768 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33827 | ||||| || ||||| |||||| ||||| ||||| || ||||| |||||||| Sbjct 9056779 AGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTGAAGAGATAA 9056838 Query 33828 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33887 | | || | |||| | |||||| ||||| | | ||| ||||| || || || Sbjct 9056839 TCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGAGTGT 9056898 Query 33888 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 | || || ||||| |||||||| || ||||| || | ||||| |||||||||||||| Sbjct 9056899 ACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTTCC 9056958 Query 33948 GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCC 34007 | ||| || || | | ||| || || || || ||||| ||| || || || ||| Sbjct 9056959 TGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAGCC 9057018 Query 34008 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATC 34066 || |||||| || |||| || | |||| || || ||| || | || || Sbjct 9057019 AACACATGTGAAATGAAATGACGCTCATTGTCTGTTAAGCGTA-CCCAGTCCGTCATGTC 9057077 Query 34067 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 || |||| |||||| || ||||| ||||| |||||||| || |||| Sbjct 9057078 CTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGCCT 9057124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629680299763200