Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq17434 417 1e-111 seq17439 257 2e-63 >seq17434 Length=8399593 Score = 417 bits (462), Expect = 1e-111 Identities = 1223/1868 (65%), Gaps = 42/1868 (2%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||| || |||| | | || || ||||| || ||||| ||||||||||| || ||| Sbjct 1622251 GTGAACTGTATGGCATTTGCAGCCGGCTTCGTGCGAAGATAATACATTCCCGTCTTAAGA 1622310 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 ||| |||| ||||||||| || || |||||| ||| | || || || | | Sbjct 1622311 CCGGCTTTCCACGAGTAAAAATGGATCGATGTCAGTTTGCCATAGTTGGGCTCAGCCACA 1622370 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || || || | || ||||||||||| ||||| || || | || || |||||||| || Sbjct 1622371 TGTATGTTGAACGACTGACTTTGATCAATGAATGCCCCGCGATCGGCTGCCATTTTGATC 1622430 Query 65019 ATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 65077 | || ||| ||| |||||||| | || ||||| | | | | || || ||| | Sbjct 1622431 GTTGT-TTTCACGGATATTTCCCACACGGTCTTATACAGATCCCTCACATTTTTTGGTAT 1622489 Query 65078 G--TTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134 | || | | || || || ||||| | | || || || |||||| || ||||||| Sbjct 1622490 GGATTCGATGTTTTGTATTGATCCTCGACTGGCGATTATTTGATTCTTCATATCATCATC 1622549 Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194 ||| || | ||| |||||| | | | | ||| |||| || || || || || || Sbjct 1622550 CCACAAGTCCAGCTCCGTTAAATCACGCAACAAATGATGATTCACCACCTGGAACTCACC 1622609 Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 65254 |||| || | || ||||| || || ||||||||| || | || |||||||| || Sbjct 1622610 GGACAGCACGCGTCGGGTGTAGATGTTTGAGGTATACGGCTCAAACGATTCATTATTGCC 1622669 Query 65255 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314 || |||||||| || ||||| || ||||| || || || | | | ||| | | ||| Sbjct 1622670 CATTATTTGAGCCGTAGATGCGGTTGGCATGGGCGCAACAAGCAGAGAATTGCGCACACC 1622729 Query 65315 GTATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 65372 ||| || |||| || || | | ||| | ||| ||||| | ||| Sbjct 1622730 --ATGCTCCTTGATCGACAGCTTAAGCGAGTTCCAGTCCCAGAGATCGGTTGGTGTCTTG 1622787 Query 65373 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 65431 |||| ||||| || || | | || |||| ||| || || || Sbjct 1622788 CCCCACATATCGTACTGTAAGATACCCTTGCTAACTGGACT-TCCTGGATAGGTTTCATA 1622846 Query 65432 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 65491 ||||||||||| | || | ||| || || || || | ||| || |||| |||||||| Sbjct 1622847 GGGTCCTTCCTTTTGGGCCAATTCGCAGCTGGCTTCCAGTGCGCCAAAATAGATGGTTTC 1622906 Query 65492 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 65551 ||||| | | ||||| | | || || ||| ||| | |||| | | ||||| Sbjct 1622907 AAAGATTTGTTGATTTAAAAGTGCGGCCTCTTCGCTCTCATAAGGATGACGCATTAGAAT 1622966 Query 65552 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 65611 || || || || |||||||| ||||||||||| || |||| ||| | ||| || | Sbjct 1622967 CAATGCATCCGCGAATCCTTGCACACCAATACCAATGGGTCGATGGCGAAAATTGGATTT 1623026 Query 65612 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 65671 | || || |||| ||||| || || || || || |||||||| | ||| || | Sbjct 1623027 CTTTGCCTCCGGAAGCGGATAGTAGTTGATGTCAATTATTTTATTCAAATTCTTGGTTAC 1623086 Query 65672 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-------TCGCTCATCTATTACAA 65724 | |||| || || |||||||| || || | ||| | || |||| Sbjct 1623087 TGTTTTGGTGACTTCTTTCAGTTTCTTGAAGTCGTACGTTTTGTCGGACGTC----ACAA 1623142 Query 65725 ACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 65784 ||||||||||||||| ||||| | ||| || ||||| | |||| | ||| ||| | Sbjct 1623143 ACATGTTCAATGCAATCGATGCTAAATTGCACACGGCAATTTCATCGGGTGCCGAATACT 1623202 Query 65785 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 65844 | || |||||||| |||||||| || |||||||| || | |||||| ||||| |||| Sbjct 1623203 CGACAATTTCAGTGCATAGATTACTGCATTTGATGGTGCCCACATTTTGCTGATTGCTCT 1623262 Query 65845 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 65904 | ||| || | ||||| | || ||| | || || ||||| || | ||| | ||| | Sbjct 1623263 TGCGGTTGCATGAGTCCTTGAACAGCATGTAAGGTGTGCCAGTCTCCACCTGTGCTTCAA 1623322 Query 65905 TAATCGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCTTTTCTCTTTCG 65963 | || || ||| | | |||| || |||| | |||| | || | ||||||| Sbjct 1623323 TGATGGCAAACCAAAGTGTTTGAGCTTTAATTACTCGATTCG---CTTTGCCCTCTTTCT 1623379 Query 65964 TATAGTGTA--TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATT 66021 || || | |||| | || || ||||| |||||||||| | | || ||||| | Sbjct 1623380 CGTATTGAACGTACAGTTTCTCAAAATCGTCGCCCCAAACATCTTGGAGGCCGGGACACT 1623439 Query 66022 CATCCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTCATAAAGAGAT 66078 || || ||||||| ||||| || |||| |||| || ||||||||||| |||| Sbjct 1623440 TATGTGGGCACATCAGGGACCAATCC---TCATTGGCTTCGACGCGTTTCATAAACAGAT 1623496 Query 66079 CAGGAATCCAAAGAGCTATAAATAAATCTCTGGT--TCTATGTTCCTCGTTTCCTGTATT 66136 |||| ||||| | || ||||| | | ||| || | ||| ||||| || || || || Sbjct 1623497 CAGGTATCCATA-AGGCATAAA-ACAGCTCACGTGCCCGATGCTCCTCTTTGCCCGTGTT 1623554 Query 66137 CTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCAT 66196 || || | ||| | || | | ||||| |||||||||| ||||| || ||||| | Sbjct 1623555 TTTCTTCAAATCCATAAATTCTAATATATCCGAATGCCACGGCTCCAAATAGATGGCAAA 1623614 Query 66197 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 66256 | || || || || || |||||||| | || | || ||||| | || | Sbjct 1623615 TGCACCCGGTCGCTTACCGCCACCCTGATCCACATAGCGTGCCACATTATTGAATACACG 1623674 Query 66257 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGC 66316 || |||||| | | ||||| || || ||||| || || | || || | || | || Sbjct 1623675 CAGCATTGGCACCAGCCCATTCGAAGTGCCATTCGTGCCACAAATCGAGGTGCCTTTGGC 1623734 Query 66317 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 66376 ||||||| | || || || || || || || ||| ||||| | |||||| | Sbjct 1623735 ACGAATACAATGAACGTTCAGCCCGATGCCACCAGCGGCTTTGGAGATCATGGCGCATTG 1623794 Query 66377 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 || | | | | |||||||| || ||| | |||| | | || ||||| Sbjct 1623795 TTCGACGGATTTGAAAATGCCCTCAATCGAATCGGAGACCATGGTTAAAAGGAAACACGA 1623854 Query 66437 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496 |||||||| ||||| | || | || ||| | || || || || ||||| || | Sbjct 1623855 CGACATTTGCGGACGATTTGTGGCAGCGGCAAAAAGTGTTGGCGATGCATGCGTGAAGTA 1623914 Query 66497 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATT 66554 ||||||| || ||||| || ||||| | ||| | || |||| ||| | ||| || Sbjct 1623915 CCTTTCAGACAGCAGATTATAGGTCTCCACAGCAGCATCAATAT--CATCGCCATGTATC 1623972 Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 66614 || | | ||| ||||| | ||||||||| || | || | || |||| ||||| ||| Sbjct 1623973 CCAATCGAGACGCGCATCAGCATGTGCTGTGGACGCTCTGCTATTTTGTGATTTATCTTC 1624032 Query 66615 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 66674 | ||| || ||| || | || ||||| |||||||| || || |||||| || ||| Sbjct 1624033 AGCAAATACGATCGCTCGAGCGTCTTAAATCCAAAATAATTATAGCCAAAGTCACGATCG 1624092 Query 66675 TAAATAAT 66682 || || || Sbjct 1624093 TAGATGAT 1624100 >seq17439 Length=18325388 Score = 257 bits (284), Expect = 2e-63 Identities = 558/828 (67%), Gaps = 13/828 (2%) Strand=Plus/Plus Query 35870 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 35929 || ||||| ||||| || || |||||||| |||||||| || ||||| || ||||| Sbjct 9056302 TGATATTCGCCCACTTTCTTCTCAAAAAAATTGGTTTTACCGTCCAATGAAATCATTTCC 9056361 Query 35930 ATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 35989 |||||| |||||||| | ||||| ||||| | || | || | ||| Sbjct 9056362 ATGAAAGTAAATGGATTCTTTGTGTTATATATTTTACCGACACCGAGCTCCACCAACAAG 9056421 Query 35990 CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 36049 | ||| || || || || |||||| ||||| |||||||||| || || || || Sbjct 9056422 CGATCGGCCACGAACTCAATATATTCGGACATCAGCGCACAATTCATGCCAATCAGATTT 9056481 Query 36050 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 36109 || || | ||| |||| ||||| || || ||||||| || || || | | ||| Sbjct 9056482 ACAGGCAAAGCGTCAGTGAGAAACTCCTGCTCAATAGTCACAGCATCCGAGAC----GAT 9056537 Query 36110 ATTACTGTTTC-TTCAC---TCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 36165 | | || | | ||||| | || | | || | || | ||||||| | || || Sbjct 9056538 CTCAATGATGCGTTCACGGCTGGGACGCTGCACCAGGTGCTGGAACATCATAACCGCAAA 9056597 Query 36166 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 36225 ||||| || || ||||| || | || | ||||| || || || || |||||||| Sbjct 9056598 GTCGCAATGCAGCCCCTCATCACGGGAGATGAGCTCGTTTGAGAAAGTCAGACCGGGCAT 9056657 Query 36226 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 36285 ||||||||||||||||||||| || ||||| ||||| || |||||| || ||||| Sbjct 9056658 TAGGCCACGCTTTTTAAGCCAGAAGATGGAGGCAAAACTGCCGCTAAAGAAGATGCCTTC 9056717 Query 36286 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--CTGTCATG-TATCCACTT 36342 || || || |||||||||| | ||| ||| | |||| || ||| ||||| Sbjct 9056718 GACGGCAGCGAAGGCAATAATGCGCTCCCCAAAGTTGGCAGCCTTGGATGAAATCCAAGA 9056777 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 | ||||| || ||||| |||||| |||||||| || |||||||| |||||||| Sbjct 9056778 GAGCGCCCAGTCCGCCTTACGCTTTACAGCCGGCATTGTTTCAATAGCATTGAAGAGATA 9056837 Query 36403 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 36462 | | || | |||| | ||| || || || | | ||| ||||| || || || Sbjct 9056838 ATCGCGCTGATGAGGATCTCGGATATAAGTGTCGATTAGCACACTGTACATCTCTGAGTG 9056897 Query 36463 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 36522 | || || ||||| || ||||| || ||||| || | ||||| |||||||| ||||| Sbjct 9056898 TACATTCTCCATGGCAATCTGAAAACCATAGAAGCAGCGCGCCTCTGTAATCTGCACTTC 9056957 Query 36523 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582 | ||| || || | | ||| || || || || || || ||| || || || || Sbjct 9056958 CTGGCTAAAGCGCTCAACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCGAAGAAAGC 9057017 Query 36583 CAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT-AGTTTATTCCAATCATTGATAT 36641 ||| |||||| || |||| || || |||| || || ||| || | || | Sbjct 9057018 CAACACATGTGAAATGAAATGACGCTCATTGTCTGTTAAGCGTA-CCCAGTCCGTCATGT 9057076 Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 | || |||| |||||| || ||||| ||||| |||||||| || |||| Sbjct 9057077 CCTTGGATAGATCCACCTCCTCCACAGTCCAGAATGATGCTTCGGCCT 9057124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658029318329600