Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq17438 159 3e-34 >seq17438 Length=17193109 Score = 159 bits (176), Expect = 3e-34 Identities = 277/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 20946 TAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGA 21005 || ||||| | || |||| ||||| |||||||| || || |||| ||||| || || Sbjct 3984309 TAGACGTGCGTATCGCCCATCGTGTGTACAAAGTCGCCAGGCTTCAGACCCGTCACATGT 3984368 Query 21006 GCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATG 21065 || |||| ||| || || ||||||||| |||||||| || || || || || |||||| Sbjct 3984369 GCAATCATATAGGTGAGCAGGGCGTAGGATGCGATGTTGAAGGGAACACCTAGACCCATG 3984428 Query 21066 TCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCC--GA--GCCACGTAAA-ACT 21120 ||||| | ||| |||| ||||||||| ||||| |||| || || || ||| | | Sbjct 3984429 TCGGCACTGCGCTGATACATCTGGCAGGAGAGCTCGCCCCTTGACTGCGACACAAAGAAT 3984488 Query 21121 GACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCG 21179 ||| | | ||| || || || || |||||| | | ||| || ||||| ||| Sbjct 3984489 TGCACCAGGCAGTGGCACGGTGGCAGCGCCATCTTAGGTATATCCAACGGATTCCATGCG 3984548 Query 21180 CACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGC 21239 |||| | |||||| ||||| ||| || || || | ||| | ||| | Sbjct 3984549 GACATTATGATGCGACGATCCGCGGGATTGTTGCGTATGGTGTCAATCACCTGCTGCAAC 3984608 Query 21240 TGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGT 21299 ||||| || ||||| || |||| | | ||| || | ||||| |||||||| || Sbjct 3984609 TGGTCGACGCCCTGGCCTGTATAGTCGTCATCGCAGCCGCGATACTCGGCCCCAAAGTGA 3984668 Query 21300 CTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTC 21337 | ||||||||| |||||||| || |||||||| ||||| Sbjct 3984669 CGCCACTGGAAACCGTACACGGGACCCAGATCTCCCTC 3984706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427685076211200